Literature DB >> 15449933

Inverse electrostatic effect: electrostatic repulsion in the unfolded state stabilizes a leucine zipper.

Daniel N Marti1, Hans Rudolf Bosshard.   

Abstract

The pH-dependent stability of a protein is strongly affected by electrostatic interactions between ionizable residues in the folded as well as unfolded state. Here we characterize the individual contributions of charged Glu and His residues to stability and determine the NMR structure of the designed, heterodimeric leucine zipper AB consisting of an acidic A chain and a basic B chain. Thermodynamic parameters are compared with those of the homologous leucine zipper AB(SS) in which the A and B chains are disulfide-linked. NMR structures of AB based on (1)H NMR data collected at 600 MHz converge, and formation of the same six interchain salt bridges found previously in disulfide-linked AB(SS) [Marti, D. N., and Bosshard, H. R. (2003) J. Mol. Biol. 330, 621-637] is indicated. While the structures of AB and AB(SS) are very similar, their pH-dependent relative stabilities are strikingly different. The stability of AB peaks at pH approximately 4.5 and is higher at pH 8 than at pH 2. In contrast, AB(SS) is most stable at acidic pH where no interhelical salt bridges are formed. The different energetic contributions of charged Glu and His residues to stability of the two coiled coil structures were evaluated from pK(a) shifts induced by folding. The six charged Glu residues involved in salt bridges stabilize leucine zipper AB by 4.5 kJ/mol yet destabilize disulfide-linked AB(SS) by -1.1 kJ/mol. Two non-ion-paired Glu charges destabilize AB by only -1.8 kJ/mol but AB(SS) by -5.6 kJ/mol. The higher relative stability of AB at neutral pH is not caused by more favorable electrostatic interactions in the folded leucine zipper. It is due mainly to unfavorable electrostatic interactions in the unfolded A and B chains and may therefore be called an inverse electrostatic effect. This study illustrates the importance of residual interactions in the unfolded state and how the energetics of the unfolded state affect the stability of the folded protein.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15449933     DOI: 10.1021/bi048771t

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  12 in total

1.  Uncovering specific electrostatic interactions in the denatured states of proteins.

Authors:  Jana K Shen
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

2.  pK(a) values for the unfolded state under native conditions explain the pH-dependent stability of PGB1.

Authors:  Stina Lindman; Mikael C Bauer; Mikael Lund; Carl Diehl; Frans A A Mulder; Mikael Akke; Sara Linse
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

3.  The effects of pK(a) tuning on the thermodynamics and kinetics of folding: design of a solvent-shielded carboxylate pair at the a-position of a coiled-coil.

Authors:  Wai Leung Lau; William F Degrado; Heinrich Roder
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

4.  Electrostatic interactions in the denatured state ensemble: their effect upon protein folding and protein stability.

Authors:  Jae-Hyun Cho; Satoshi Sato; Jia-Cherng Horng; Burcu Anil; Daniel P Raleigh
Journal:  Arch Biochem Biophys       Date:  2007-08-22       Impact factor: 4.013

5.  Solvation counteracts coulombic repulsion in the binding of two cations to a model hexapeptide.

Authors:  Hongqi Ai; Chong Zhang; Wei He; Kwaichow Chan; Qiang Li
Journal:  J Mol Model       Date:  2011-03-29       Impact factor: 1.810

6.  Evidence that the bZIP domains of the Jun transcription factor bind to DNA as monomers prior to folding and homodimerization.

Authors:  Kenneth L Seldeen; Caleb B McDonald; Brian J Deegan; Amjad Farooq
Journal:  Arch Biochem Biophys       Date:  2008-10-12       Impact factor: 4.013

7.  Hydrophile scanning as a complement to alanine scanning for exploring and manipulating protein-protein recognition: application to the Bim BH3 domain.

Authors:  Melissa D Boersma; Jack D Sadowsky; York A Tomita; Samuel H Gellman
Journal:  Protein Sci       Date:  2008-05-08       Impact factor: 6.725

8.  Kinetic studies on strand displacement in de novo designed parallel heterodimeric coiled coils.

Authors:  Mike C Groth; W Mathis Rink; Nils F Meyer; Franziska Thomas
Journal:  Chem Sci       Date:  2018-04-17       Impact factor: 9.825

9.  An effective all-atom potential for proteins.

Authors:  Anders Irbäck; Simon Mitternacht; Sandipan Mohanty
Journal:  PMC Biophys       Date:  2009-04-08

10.  Modulation of electrostatic interactions to reveal a reaction network unifying the aggregation behaviour of the Aβ42 peptide and its variants.

Authors:  Georg Meisl; Xiaoting Yang; Christopher M Dobson; Sara Linse; Tuomas P J Knowles
Journal:  Chem Sci       Date:  2017-04-26       Impact factor: 9.825

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.