| Literature DB >> 15381933 |
J Han1, S E Hankinson, G A Colditz, D J Hunter.
Abstract
The XRCC1 gene is involved in the base excision repair pathway. We assessed the associations of polymorphisms and haplotypes in XRCC1 with skin cancer risk in a nested case-control study within the Nurses' Health Study (219 melanoma, 286 squamous cell carcinoma (SCC) and 300 basal cell carcinoma (BCC), and 873 controls). We genotyped four haplotype-tagging single-nucleotide polymorphisms (Arg194Trp, C26602T, Arg399Gln, and Gln632Gln). There was no significant difference in frequency distribution between cases and controls for any of the five inferred common haplotypes. We observed that the 399Gln allele was inversely associated with SCC risk. This inverse association was only seen among those who had five or more lifetime sunburns, those with a family history of skin cancer, and those in the highest tertile of cumulative sun exposure in a bathing suit, but not among those with low risk defined by these risk factors. We also observed a significant association of the carriage of 194Trp allele with increased SCC risk, which was modified by family history of skin cancer. These two polymorphisms were not associated with BCC or melanoma risk. Our data suggest that the Arg194Trp and Arg399Gln polymorphisms may be differently associated with skin cancer risk according to exposure dose and skin cancer type.Entities:
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Year: 2004 PMID: 15381933 PMCID: PMC2409924 DOI: 10.1038/sj.bjc.6602174
Source DB: PubMed Journal: Br J Cancer ISSN: 0007-0920 Impact factor: 7.640
Frequencies of PLEM inferred haplotypes in cases and controls
| 0 | 0 | 0 | 0 | 47 (11.8) | 0.50 | 73 (13.8) | 0.06 | 51 (9.8) | 0.59 | 168 (10.7) |
| 1 | 0 | 0 | 0 | 26 (6.5) | 0.78 | 40 (7.5) | 0.30 | 33 (6.3) | 0.87 | 97 (6.2) |
| 0 | 1 | 0 | 0 | 14 (3.5) | 0.40 | 16 (3.0) | 0.12 | 25 (4.8) | 0.71 | 69 (4.4) |
| 0 | 0 | 1 | 0 | 147 (36.9) | 0.54 | 169 (31.7) | 0.14 | 187 (35.9) | 0.77 | 555 (35.3) |
| 0 | 0 | 0 | 1 | 163 (40.9) | 0.42 | 233 (43.8) | 0.79 | 223 (42.9) | 0.91 | 680 (43.2) |
Haplotype frequencies from our observed genotypes were estimated using PLEM. Five common haplotypes were listed. The P-values for differences in haplotype frequencies between cases and controls were determined by the two-sample proportion test incorporating standard error from PLEM output. ‘0’ stands for common allele; ‘1’ stands for rare allele. Three additional rare haplotypes were also inferred (all less than 0.5% in cases or controls).
XRCC1 genotypes and skin cancer risk
| Arg194Trp | ||||||||||
| wt/wt | 764 | 185 | 1.00 | 1.00 | 240 | 1.00 | 1.00 | 260 | 1.00 | 1.00 |
| het | 93 | 30 | 1.24 (0.80–1.93) | 1.28 (0.79–2.06) | 44 | 1.44 (0.98–2.11) | 1.51 (1.01–2.28) | 34 | 1.09 (0.73–1.63) | 1.26 (0.82–1.93) |
| var/var | 6 | 0 | 0 | 3 | ||||||
| Heterogeneity | 0.56 | |||||||||
| C26602T | ||||||||||
| wt/wt | 770 | 198 | 1.00 | 1.00 | 261 | 1.00 | 1.00 | 261 | 1.00 | 1.00 |
| het | 68 | 15 | 0.83 (0.46–1.48) | 1.01 (0.55–1.88) | 17 | 0.68 (0.39–1.18) | 0.73 (0.41–1.30) | 28 | 1.14 (0.72–1.80) | 1.12 (0.68–1.83) |
| var/var | 4 | 0 | 0 | 0 | ||||||
| Heterogeneity | 0.25 | |||||||||
| Arg399Gln | ||||||||||
| wt/wt | 345 | 76 | 1.00 | 1.00 | 128 | 1.00 | 1.00 | 108 | 1.00 | 1.00 |
| het | 351 | 99 | 1.26 (0.90–1.77) | 1.17 (0.81–1.67) | 112 | 0.85 (0.63–1.14) | 0.84 (0.62–1.15) | 124 | 1.13 (0.84–1.52) | 1.08 (0.79–1.48) |
| var/var | 119 | 29 | 1.10 (0.68–1.77) | 0.83 (0.49–1.39) | 33 | 0.74 (0.48–1.14) | 0.61 (0.39–0.97) | 35 | 0.94 (0.61–1.45) | 0.84 (0.53–1.33) |
| Trend | 0.42 | 0.77 | 0.13 | 0.04 | 0.93 | 0.68 | ||||
| Heterogeneity | 0.18 | |||||||||
| Gln632Gln | ||||||||||
| wt/wt | 277 | 72 | 1.00 | 1.00 | 89 | 1.00 | 1.00 | 98 | 1.00 | 1.00 |
| het | 406 | 103 | 0.97 (0.69–1.36) | 1.06 (0.74–1.52) | 142 | 1.10 (0.81–1.50) | 1.19 (0.86–1.65) | 147 | 1.02 (0.76–1.38) | 1.06 (0.78–1.46) |
| var/var | 170 | 38 | 0.87 (0.56–1.36) | 0.97 (0.61–1.54) | 53 | 0.98 (0.66–1.45) | 1.00 (0.66–1.50) | 52 | 0.87 (0.59–1.28) | 0.87 (0.58–1.31) |
| Trend | 0.57 | 0.95 | 0.98 | 0.86 | 0.54 | 0.61 | ||||
| Heterogeneity | 0.82 | |||||||||
The number of participants does not sum to total women because of missing data on genotype.
Unconditional logistic regression adjusted for the matching variables: age and race (Caucasian, non-Caucasian).
Unconditional logistic regression adjusted for the matching variables, constitutional susceptibility score (tertiles), family history of skin cancer (yes/no), the number of lifetime severe sunburns which blistered (none, 1–5, 6–11, >11), sunlamp use or tanning salon attendance (yes/no), cumulative sun exposure while wearing a bathing suit (tertiles), and geographic region.
The OR was calculated to compare heterozygote and homozygous variant combined with wildtype.
Likelihood ratio test to evaluate heterogeneity in the effects of the XRCC1 genotypes on different types of skin cancer in polytomous logistic regression models adjusted for variables in the multivariate model C.
Interaction between XRCC1 Arg399Gln and risk factors on SCC risk
| Lifetime severe sunburns | |||||||
|---|---|---|---|---|---|---|---|
| Never | 17/110 | 1.00 | 20/89 | 1.56 (0.75–3.28) | 8/27 | 2.06 (0.77–5.56) | 0.12 |
| 1–4 | 39/87 | 2.75 (1.42–5.35) | 26/94 | 1.64 (0.81–3.31) | 11/28 | 2.18 (0.88–5.38) | 0.38 |
| ⩾5 | 47/72 | 3.19 (1.63–6.22) | 41/85 | 2.36 (1.21–4.61) | 11/36 | 1.18 (0.48–2.89) | 0.04 |
| Family history of skin cancer | |||||||
| No | 80/269 | 1.00 | 70/257 | 0.90 (0.61–1.32) | 25/83 | 0.96 (0.56–1.63) | 0.71 |
| Yes | 48/76 | 1.75 (1.09–2.81) | 42/94 | 1.27 (0.78–2.04) | 8/36 | 0.40 (0.17–0.93) | 0.001 |
| Cumulative sun exposure with a bathing suit | |||||||
| Low | 25/94 | 1.00 | 22/87 | 0.83 (0.42–1.64) | 9/31 | 0.96 (0.40–2.35) | 0.74 |
| Intermediate | 29/89 | 1.09 (0.57–2.05) | 33/96 | 1.27 (0.68–2.37) | 7/25 | 0.99 (0.37–2.65) | 0.66 |
| High | 54/89 | 2.58 (1.43–4.67) | 41/88 | 1.74 (0.94–3.22) | 14/40 | 1.10 (0.50–2.45) | 0.02 |
| Geographic Region | |||||||
| Northeast | 50/145 | 1.00 | 47/160 | 0.93 (0.58–1.51) | 17/52 | 0.91 (0.46–1.78) | 0.96 |
| Northcentral | 19/68 | 0.96 (0.51–1.81) | 13/48 | 0.84 (0.41–1.74) | 4/18 | 0.56 (0.17–1.84) | 0.19 |
| West and South | 34/56 | 2.11 (1.19–3.72) | 27/60 | 1.32 (0.73–2.40) | 9/21 | 1.07 (0.44–2.62) | 0.12 |
The number of participants does not sum to total women because of missing data on genotype.
Unconditional logistic regression adjusted for the matching variables, constitutional susceptibility score (tertiles), family history of skin cancer (yes/no), sunlamp use or tanning salon attendance (yes/no), cumulative sun exposure with a bathing suit (tertiles), and geographic regions.
Unconditional logistic regression adjusted for the matching variables, constitutional susceptibility score (tertiles), the number of lifetime severe sunburns which blistered (none, 1–5, 6–11, >11), sunlamp use or tanning salon attendance (yes/no), cumulative sun exposure with a bathing suit (tertiles), and geographic regions.
Unconditional logistic regression adjusted for the matching variables, constitutional susceptibility score (tertiles), family history of skin cancer (yes/no), the number of lifetime severe sunburns which blistered (none, 1–5, 6–11, >11), sunlamp use or tanning salon attendance (yes/no), and geographic regions.
Unconditional logistic regression adjusted for the matching variables, constitutional susceptibility score (tertiles), family history of skin cancer (yes/no), the number of lifetime severe sunburns which blistered (none, 1–5, 6–11, >11), sunlamp use or tanning salon attendance (yes/no), and cumulative sun exposure with a bathing suit (tertiles).