Literature DB >> 15381777

An embedded network approach for scale-up of fluctuation-driven systems with preservation of spike information.

David Cai1, Louis Tao, David W McLaughlin.   

Abstract

To address computational "scale-up" issues in modeling large regions of the cortex, many coarse-graining procedures have been invoked to obtain effective descriptions of neuronal network dynamics. However, because of local averaging in space and time, these methods do not contain detailed spike information and, thus, cannot be used to investigate, e.g., cortical mechanisms that are encoded through detailed spike-timing statistics. To retain high-order statistical information of spikes, we develop a hybrid theoretical framework that embeds a subnetwork of point neurons within, and fully interacting with, a coarse-grained network of dynamical background. We use a newly developed kinetic theory for the description of the coarse-grained background, in combination with a Poisson spike reconstruction procedure to ensure that our method applies to the fluctuation-driven regime as well as to the mean-driven regime. This embedded-network approach is verified to be dynamically accurate and numerically efficient. As an example, we use this embedded representation to construct "reverse-time correlations" as spiked-triggered averages in a ring model of orientation-tuning dynamics.

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Year:  2004        PMID: 15381777      PMCID: PMC521148          DOI: 10.1073/pnas.0404062101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  21 in total

1.  Computational modeling of orientation tuning dynamics in monkey primary visual cortex.

Authors:  M C Pugh; D L Ringach; R Shapley; M J Shelley
Journal:  J Comput Neurosci       Date:  2000 Mar-Apr       Impact factor: 1.621

2.  Population dynamics of spiking neurons: fast transients, asynchronous states, and locking.

Authors:  W Gerstner
Journal:  Neural Comput       Date:  2000-01       Impact factor: 2.026

3.  The contribution of noise to contrast invariance of orientation tuning in cat visual cortex.

Authors:  J S Anderson; I Lampl; D C Gillespie; D Ferster
Journal:  Science       Date:  2000-12-08       Impact factor: 47.728

4.  How simple cells are made in a nonlinear network model of the visual cortex.

Authors:  D J Wielaard; M Shelley; D McLaughlin; R Shapley
Journal:  J Neurosci       Date:  2001-07-15       Impact factor: 6.167

5.  Population density methods for large-scale modelling of neuronal networks with realistic synaptic kinetics: cutting the dimension down to size.

Authors:  E Haskell; D Q Nykamp; D Tranchina
Journal:  Network       Date:  2001-05       Impact factor: 1.273

6.  An effective kinetic representation of fluctuation-driven neuronal networks with application to simple and complex cells in visual cortex.

Authors:  David Cai; Louis Tao; Michael Shelley; David W McLaughlin
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-06       Impact factor: 11.205

7.  Dynamics of orientation tuning in macaque primary visual cortex.

Authors:  D L Ringach; M J Hawken; R Shapley
Journal:  Nature       Date:  1997-05-15       Impact factor: 49.962

8.  A mathematical theory of the functional dynamics of cortical and thalamic nervous tissue.

Authors:  H R Wilson; J D Cowan
Journal:  Kybernetik       Date:  1973-09

9.  Spontaneous subthreshold membrane potential fluctuations and action potential variability of rat corticostriatal and striatal neurons in vivo.

Authors:  E A Stern; A E Kincaid; C J Wilson
Journal:  J Neurophysiol       Date:  1997-04       Impact factor: 2.714

10.  Dynamics of encoding in a population of neurons.

Authors:  B W Knight
Journal:  J Gen Physiol       Date:  1972-06       Impact factor: 4.086

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  1 in total

Review 1.  On the nature and use of models in network neuroscience.

Authors:  Danielle S Bassett; Perry Zurn; Joshua I Gold
Journal:  Nat Rev Neurosci       Date:  2018-09       Impact factor: 34.870

  1 in total

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