Literature DB >> 15377787

High-throughput microarray detection of olfactory receptor gene expression in the mouse.

Xinmin Zhang1, Matthew Rogers, Huikai Tian, Xiaohong Zhang, Dong-Jing Zou, Jian Liu, Minghong Ma, Gordon M Shepherd, Stuart J Firestein.   

Abstract

The large number of olfactory receptor genes necessitates high throughput methods to analyze their expression patterns. We have therefore designed a high-density oligonucleotide array containing all known mouse olfactory receptor (OR) and V1R vomeronasal receptor genes. This custom array detected a large number of receptor genes, demonstrating specific expression in the olfactory sensory epithelium for approximately 800 OR genes previously designated as ORs based solely on genomic sequences. The array also enabled us to monitor the spatial and temporal distribution of gene expression for the entire OR family. Interestingly, OR genes showing spatially segregated expression patterns were also segregated on the chromosomes. This correlation between genomic location and spatial expression provides unique insights about the regulation of this large family of genes.

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Year:  2004        PMID: 15377787      PMCID: PMC521132          DOI: 10.1073/pnas.0405350101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

1.  Multiple new and isolated families within the mouse superfamily of V1r vomeronasal receptors.

Authors:  Ivan Rodriguez; Karina Del Punta; Andrea Rothman; Tomohiro Ishii; Peter Mombaerts
Journal:  Nat Neurosci       Date:  2002-02       Impact factor: 24.884

Review 2.  How the olfactory system makes sense of scents.

Authors:  S Firestein
Journal:  Nature       Date:  2001-09-13       Impact factor: 49.962

3.  The olfactory receptor gene superfamily of the mouse.

Authors:  Xinmin Zhang; Stuart Firestein
Journal:  Nat Neurosci       Date:  2002-02       Impact factor: 24.884

4.  Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data.

Authors:  E E Schadt; C Li; B Ellis; W H Wong
Journal:  J Cell Biochem Suppl       Date:  2001

5.  The OMP-lacZ transgene mimics the unusual expression pattern of OR-Z6, a new odorant receptor gene on mouse chromosome 6: implication for locus-dependent gene expression.

Authors:  M Pyrski; Z Xu; E Walters; D J Gilbert; N A Jenkins; N G Copeland; F L Margolis
Journal:  J Neurosci       Date:  2001-07-01       Impact factor: 6.167

6.  The complete human olfactory subgenome.

Authors:  G Glusman; I Yanai; I Rubin; D Lancet
Journal:  Genome Res       Date:  2001-05       Impact factor: 9.043

Review 7.  The human repertoire of odorant receptor genes and pseudogenes.

Authors:  P Mombaerts
Journal:  Annu Rev Genomics Hum Genet       Date:  2001       Impact factor: 8.929

8.  Expression of olfactory receptor and transduction genes during rat development.

Authors:  T Margalit; D Lancet
Journal:  Brain Res Dev Brain Res       Date:  1993-05-21

9.  Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection.

Authors:  C Li; W H Wong
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-02       Impact factor: 11.205

10.  The human olfactory receptor repertoire.

Authors:  S Zozulya; F Echeverri; T Nguyen
Journal:  Genome Biol       Date:  2001-06-01       Impact factor: 13.583

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  79 in total

1.  Molecular organization of the olfactory septal organ.

Authors:  Huikai Tian; Minghong Ma
Journal:  J Neurosci       Date:  2004-09-22       Impact factor: 6.167

2.  Ric-8B promotes functional expression of odorant receptors.

Authors:  Luiz Eduardo C Von Dannecker; Adriana F Mercadante; Bettina Malnic
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-05       Impact factor: 11.205

3.  Comparative genomics of odorant and pheromone receptor genes in rodents.

Authors:  Xiaohong Zhang; Xinmin Zhang; Stuart Firestein
Journal:  Genomics       Date:  2007-02-15       Impact factor: 5.736

4.  Differential development of odorant receptor expression patterns in the olfactory epithelium: a quantitative analysis in the mouse septal organ.

Authors:  Huikai Tian; Minghong Ma
Journal:  Dev Neurobiol       Date:  2008-03       Impact factor: 3.964

5.  In silico approach to identify the expression of the undiscovered molecules from microarray public database: identification of odorant receptors expressed in non-olfactory tissues.

Authors:  Atsuhiko Ichimura; Tadashi Kadowaki; Kayo Narukawa; Kayo Togiya; Akira Hirasawa; Gozoh Tsujimoto
Journal:  Naunyn Schmiedebergs Arch Pharmacol       Date:  2008-01-29       Impact factor: 3.000

6.  Immunocytochemical Localization of Olfactory-signaling Molecules in Human and Rat Spermatozoa.

Authors:  Yuliya Makeyeva; Christopher Nicol; William L Ledger; David K Ryugo
Journal:  J Histochem Cytochem       Date:  2020-06-30       Impact factor: 2.479

7.  A Near-Complete Spatial Map of Olfactory Receptors in the Mouse Main Olfactory Epithelium.

Authors:  Longzhi Tan; Xiaoliang Sunney Xie
Journal:  Chem Senses       Date:  2018-07-05       Impact factor: 3.160

8.  An olfactory subsystem that mediates high-sensitivity detection of volatile amines.

Authors:  Rodrigo Pacifico; Adam Dewan; Dillon Cawley; Caiying Guo; Thomas Bozza
Journal:  Cell Rep       Date:  2012-06-28       Impact factor: 9.423

9.  Mapping of class I and class II odorant receptors to glomerular domains by two distinct types of olfactory sensory neurons in the mouse.

Authors:  Thomas Bozza; Anne Vassalli; Stefan Fuss; Jing-Ji Zhang; Brian Weiland; Rodrigo Pacifico; Paul Feinstein; Peter Mombaerts
Journal:  Neuron       Date:  2009-01-29       Impact factor: 17.173

10.  RNA profiles of rat olfactory epithelia: individual and age related variations.

Authors:  Maud Rimbault; Stéphanie Robin; Amaury Vaysse; Francis Galibert
Journal:  BMC Genomics       Date:  2009-12-02       Impact factor: 3.969

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