Literature DB >> 15377231

Visualizing chromosome structure/organization.

Eric Lam1, Naohiro Kato, Koichi Watanabe.   

Abstract

With the rapid development of sequencing technologies in the past decade, many eukaryotic genomes have been resolved at the primary sequence level. However, organization of the genome within nuclei and the principles that govern such properties remain largely unclear. Optimization of fluorescence probe-based hybridization technologies combined with new advances in the instrumentation for microscopy has steadily yielded more structural information on chromosome organization in eukaryote model systems. These studies provide static snapshots of the detailed organization of chromatin. More recently, the successful application of a chromatin tagging strategy utilizing auto fluorescent fusion proteins opened a new era of chromatin studies in which the dynamic organization of the genome can be tracked in near real time. This review focuses on these new approaches to studying chromatin organization and dynamics in plants, and on future prospects in unraveling the basic principle of chromosome organization.

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Substances:

Year:  2004        PMID: 15377231     DOI: 10.1146/annurev.arplant.55.031903.141807

Source DB:  PubMed          Journal:  Annu Rev Plant Biol        ISSN: 1543-5008            Impact factor:   26.379


  8 in total

1.  Pairing of lacO tandem repeats in Arabidopsis thaliana nuclei requires the presence of hypermethylated, large arrays at two chromosomal positions, but does not depend on H3-lysine-9-dimethylation.

Authors:  Gabriele Jovtchev; Branimira Emilova Borisova; Markus Kuhlmann; Jörg Fuchs; Koichi Watanabe; Ingo Schubert; Michael Florian Mette
Journal:  Chromosoma       Date:  2011-08-10       Impact factor: 4.316

2.  Centromere positioning and dynamics in living Arabidopsis plants.

Authors:  Yuda Fang; David L Spector
Journal:  Mol Biol Cell       Date:  2005-09-29       Impact factor: 4.138

3.  Use of two-color fluorescence-tagged transgenes to study interphase chromosomes in living plants.

Authors:  Antonius J M Matzke; Bruno Huettel; Johannes van der Winden; Marjori Matzke
Journal:  Plant Physiol       Date:  2005-12       Impact factor: 8.340

4.  Chromosome territory arrangement and homologous pairing in nuclei of Arabidopsis thaliana are predominantly random except for NOR-bearing chromosomes.

Authors:  Ales Pecinka; Veit Schubert; Armin Meister; Gregor Kreth; Marco Klatte; Martin A Lysak; Jörg Fuchs; Ingo Schubert
Journal:  Chromosoma       Date:  2004-10-09       Impact factor: 4.316

5.  Size and number of tandem repeat arrays can determine somatic homologous pairing of transgene loci mediated by epigenetic modifications in Arabidopsis thaliana nuclei.

Authors:  Gabriele Jovtchev; Koichi Watanabe; Ales Pecinka; Faye M Rosin; Michael F Mette; Eric Lam; Ingo Schubert
Journal:  Chromosoma       Date:  2008-01-17       Impact factor: 4.316

6.  Random homologous pairing and incomplete sister chromatid alignment are common in angiosperm interphase nuclei.

Authors:  Veit Schubert; Young-Min Kim; Alexandre Berr; Jörg Fuchs; Armin Meister; Sylvia Marschner; Ingo Schubert
Journal:  Mol Genet Genomics       Date:  2007-05-24       Impact factor: 2.980

7.  An integrated map of Oryza sativa L. chromosome 5.

Authors:  Fang-I Kao; Yueh-Yun Cheng; Teh-Yuan Chow; Hong-Hwa Chen; Shu-Mei Liu; Chia-Hsiung Cheng; Mei-Chu Chung
Journal:  Theor Appl Genet       Date:  2005-12-20       Impact factor: 5.574

Review 8.  Decoding the role of chromatin architecture in development: coming closer to the end of the tunnel.

Authors:  Chongyuan Luo; Juan Dong; Yi Zhang; Eric Lam
Journal:  Front Plant Sci       Date:  2014-08-21       Impact factor: 5.753

  8 in total

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