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Literature DB >> 15374874

Clann: investigating phylogenetic information through supertree analyses.

Abstract

UNLABELLED: Clann has been developed in order to provide methods of investigating phylogenetic information through the application of supertrees. AVAILABILITY: Clann has been precompiled for Linux, Apple Macintosh and Windows operating systems and is available from http://bioinf.may.ie/software/clann. Source code is available on request from the authors. SUPPLEMENTARY INFORMATION: Clann has been written in the C programming language. Source code is available on request.

Entities: Species

Mesh：

Year: 2004 PMID： 15374874 DOI： 10.1093/bioinformatics/bti020

Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937

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Cited

82 in total

1. Reconstructing the fungal tree of life using phylogenomics and a preliminary investigation of the distribution of yeast prion-like proteins in the fungal kingdom.

Authors: Edgar M Medina; Gary W Jones; David A Fitzpatrick
Journal: J Mol Evol Date: 2011-09-22 Impact factor: 2.395

2. Phylogenetic analyses of cyanobacterial genomes: quantification of horizontal gene transfer events.

Authors: Olga Zhaxybayeva; J Peter Gogarten; Robert L Charlebois; W Ford Doolittle; R Thane Papke
Journal: Genome Res Date: 2006-08-09 Impact factor: 9.043

3. Split-based computation of majority-rule supertrees.

Authors: Anne Kupczok
Journal: BMC Evol Biol Date: 2011-07-13 Impact factor: 3.260

4. Gene and genome trees conflict at many levels.

Authors: Leanne S Haggerty; Fergal J Martin; David A Fitzpatrick; James O McInerney
Journal: Philos Trans R Soc Lond B Biol Sci Date: 2009-08-12 Impact factor: 6.237

5. A supertree of temnospondyli: cladogenetic patterns in the most species-rich group of early tetrapods.

Authors: Marcello Ruta; Davide Pisani; Graeme T Lloyd; Michael J Benton
Journal: Proc Biol Sci Date: 2007-12-22 Impact factor: 5.349

6. Genome sequence of Lactobacillus helveticus, an organism distinguished by selective gene loss and insertion sequence element expansion.

Authors: Michael Callanan; Pawel Kaleta; John O'Callaghan; Orla O'Sullivan; Kieran Jordan; Olivia McAuliffe; Amaia Sangrador-Vegas; Lydia Slattery; Gerald F Fitzgerald; Tom Beresford; R Paul Ross
Journal: J Bacteriol Date: 2007-11-09 Impact factor: 3.490

Clann: investigating phylogenetic information through supertree analyses.

1. Reconstructing the fungal tree of life using phylogenomics and a preliminary investigation of the distribution of yeast prion-like proteins in the fungal kingdom.

2. Phylogenetic analyses of cyanobacterial genomes: quantification of horizontal gene transfer events.

3. Split-based computation of majority-rule supertrees.

4. Gene and genome trees conflict at many levels.

5. A supertree of temnospondyli: cladogenetic patterns in the most species-rich group of early tetrapods.

6. Genome sequence of Lactobacillus helveticus, an organism distinguished by selective gene loss and insertion sequence element expansion.

7. BCD Beam Search: considering suboptimal partial solutions in Bad Clade Deletion supertrees.

8. A nitrile hydratase in the eukaryote Monosiga brevicollis.

9. A new effective method for estimating missing values in the sequence data prior to phylogenetic analysis.

10. PhyloExplorer: a web server to validate, explore and query phylogenetic trees.