Literature DB >> 15369345

Zinc is an essential cofactor for type I isopentenyl diphosphate:dimethylallyl diphosphate isomerase.

Christina N Carrigan1, C Dale Poulter.   

Abstract

Isopentenyl diphosphate (IPP) isomerase catalyzes the interconversion of IPP and dimethylallyl diphosphate (DMAPP). This is an essential reaction in the mevalonate pathway for biosynthesis of isoprenoid compounds. A crystal structure of Escherichia coli type I IPP isomerase shows a his3glu2 octahedral metal binding site (Durbecq, V. et al. EMBO, 2001, 20, 1530-1537). A metal ion analysis of recombinant E. coli type I IPP isomerase purified from metal-free buffer or buffer containing 10 muM ZnCl2 and 10 muM MnCl2 indicated that the protein contained one atom of Zn2+ per molecule. The metal content and the activity of the enzyme did not change when dialyzed for 6 h against metal-free buffer but rapidly decreased upon dialysis against buffer containing o-phenanthroline. Structural and catalytic roles for Zn2+ are discussed.

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Year:  2003        PMID: 15369345     DOI: 10.1021/ja0350381

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  14 in total

1.  Type-2 isopentenyl diphosphate isomerase. Mechanistic studies with cyclopropyl and epoxy analogues.

Authors:  Jonathan B Johnston; Joel R Walker; Steven C Rothman; C Dale Poulter
Journal:  J Am Chem Soc       Date:  2007-06-05       Impact factor: 15.419

Review 2.  Mechanistic aspects of carotenoid biosynthesis.

Authors:  Alexander R Moise; Salim Al-Babili; Eleanore T Wurtzel
Journal:  Chem Rev       Date:  2013-10-31       Impact factor: 60.622

3.  Monoclinic form of isopentenyl diphosphate isomerase: a case of polymorphism in biomolecular crystals.

Authors:  Jérôme de Ruyck; Yamina Oudjama; Johan Wouters
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-03-21

4.  Isopentenyl diphosphate isomerase catalyzed reactions in D2O: product release limits the rate of this sluggish enzyme-catalyzed reaction.

Authors:  Venkatadurga Jonnalagadda; Krisztina Toth; John P Richard
Journal:  J Am Chem Soc       Date:  2012-04-05       Impact factor: 15.419

5.  Inhibition Studies on Enzymes Involved in Isoprenoid Biosynthesis: Focus on Two Potential Drug Targets: DXR and IDI-2 Enzymes.

Authors:  Jérôme de Ruyck; Johan Wouters; C Dale Poulter
Journal:  Curr Enzym Inhib       Date:  2011-07

6.  A single gene encodes isopentenyl diphosphate isomerase isoforms targeted to plastids, mitochondria and peroxisomes in Catharanthus roseus.

Authors:  Grégory Guirimand; Anthony Guihur; Michael A Phillips; Audrey Oudin; Gaëlle Glévarec; Céline Melin; Nicolas Papon; Marc Clastre; Benoit St-Pierre; Manuel Rodríguez-Concepción; Vincent Burlat; Vincent Courdavault
Journal:  Plant Mol Biol       Date:  2012-05-26       Impact factor: 4.076

7.  Crystal structure of type 2 isopentenyl diphosphate isomerase from Thermus thermophilus in complex with inorganic pyrophosphate.

Authors:  Jérôme de Ruyck; Jenny Pouyez; Steven C Rothman; Dale Poulter; Johan Wouters
Journal:  Biochemistry       Date:  2008-08-12       Impact factor: 3.162

Review 8.  Metal limitation and toxicity at the interface between host and pathogen.

Authors:  Kyle W Becker; Eric P Skaar
Journal:  FEMS Microbiol Rev       Date:  2014-09-29       Impact factor: 16.408

9.  Determination of kinetics and the crystal structure of a novel type 2 isopentenyl diphosphate: dimethylallyl diphosphate isomerase from Streptococcus pneumoniae.

Authors:  Jerome de Ruyck; Matthew W Janczak; Syam Sundar Neti; Steven C Rothman; Heidi L Schubert; Rita M Cornish; Andre Matagne; Johan Wouters; C Dale Poulter
Journal:  Chembiochem       Date:  2014-06-06       Impact factor: 3.164

10.  The Arabidopsis thaliana type I Isopentenyl Diphosphate Isomerases are targeted to multiple subcellular compartments and have overlapping functions in isoprenoid biosynthesis.

Authors:  Michael A Phillips; John C D'Auria; Jonathan Gershenzon; Eran Pichersky
Journal:  Plant Cell       Date:  2008-03-04       Impact factor: 11.277

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