Literature DB >> 15363896

Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome.

Cathal Seoighe1, Chris Gehring.   

Abstract

Multiple ancient genome duplications in Arabidopsis thaliana provide unique opportunities to assess factors that influence the fates of duplicated genes. We have found that genes retained in duplicate following one round of genome duplication are significantly more likely to be retained in duplicate again after a subsequent genome duplication. Genes retained in duplicate form a functionally biased set and include a significant over-representation of genes involved in the regulation of transcription.

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Year:  2004        PMID: 15363896     DOI: 10.1016/j.tig.2004.07.008

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  107 in total

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2.  Sequence-level analysis of the diploidization process in the triplicated FLOWERING LOCUS C region of Brassica rapa.

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4.  Gene Duplicability of Core Genes Is Highly Consistent across All Angiosperms.

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6.  Modeling gene and genome duplications in eukaryotes.

Authors:  Steven Maere; Stefanie De Bodt; Jeroen Raes; Tineke Casneuf; Marc Van Montagu; Martin Kuiper; Yves Van de Peer
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-30       Impact factor: 11.205

7.  Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes.

Authors:  Brian C Thomas; Brent Pedersen; Michael Freeling
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8.  External factors accelerate expression divergence between duplicate genes.

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Journal:  Trends Genet       Date:  2007-02-22       Impact factor: 11.639

9.  PlanTAPDB, a phylogeny-based resource of plant transcription-associated proteins.

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Journal:  Plant Physiol       Date:  2007-03-02       Impact factor: 8.340

10.  Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with rosids.

Authors:  Eric Lyons; Brent Pedersen; Josh Kane; Maqsudul Alam; Ray Ming; Haibao Tang; Xiyin Wang; John Bowers; Andrew Paterson; Damon Lisch; Michael Freeling
Journal:  Plant Physiol       Date:  2008-10-24       Impact factor: 8.340

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