Literature DB >> 15359380

Genetic variation in radiation-induced expression phenotypes.

Candace R Correa1, Vivian G Cheung.   

Abstract

Studies have demonstrated that natural variation in the expression level of genes at baseline is extensive, and the determinants of this variation can be mapped by a genetic-linkage approach. In this study, we used lymphoblastoid cells to explore the variation in radiation-induced transcriptional changes. We found that, among normal individuals, there is extensive variation in transcriptional response to radiation exposure. By studying monozygotic twins, we demonstrated that there is evidence of a heritable component to this variation. The postradiation variation in the expression level of several genes, including the ferredoxin reductase gene (FDXR) and the cyclin-dependent kinase inhibitor 1A gene (CDKN1A), is significantly greater (P<.001) among twin pairs than within twin pairs. The induction of FDXR by radiation showed a bimodal distribution. Our findings have important implications for understanding the genetic basis of radiation response, which has remained largely unknown due to the lack of family material needed for genetic studies. Our approach, which uses expression phenotypes in cell lines, allows us to expose cells from family members to radiation. Similar study design can be applied to dissect the genetic basis of other complex human traits.

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Year:  2004        PMID: 15359380      PMCID: PMC1182118          DOI: 10.1086/425221

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  16 in total

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Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

2.  Gene expression responses in lymphoblastoid cells after radiation exposure.

Authors:  B N Ford; D Wilkinson; E M Thorleifson; B L Tracy
Journal:  Radiat Res       Date:  2001-11       Impact factor: 2.841

Review 3.  The genetics of variation in gene expression.

Authors:  Vivian G Cheung; Richard S Spielman
Journal:  Nat Genet       Date:  2002-12       Impact factor: 38.330

4.  Natural variation in human gene expression assessed in lymphoblastoid cells.

Authors:  Vivian G Cheung; Laura K Conlin; Teresa M Weber; Melissa Arcaro; Kuang-Yu Jen; Michael Morley; Richard S Spielman
Journal:  Nat Genet       Date:  2003-02-03       Impact factor: 38.330

5.  Differential responses of stress genes to low dose-rate gamma irradiation.

Authors:  Sally A Amundson; Richard Anthony Lee; Christine A Koch-Paiz; Michael L Bittner; Paul Meltzer; Jeffrey M Trent; Albert J Fornace
Journal:  Mol Cancer Res       Date:  2003-04       Impact factor: 5.852

6.  Comparison between normal tissue reactions and local tumor control in head and neck cancer patients treated by definitive radiotherapy.

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7.  Deterministic rather than stochastic factors explain most of the variation in the expression of skin telangiectasia after radiotherapy.

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Review 8.  The inherited basis of human radiosensitivity.

Authors:  R A Gatti
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Review 9.  Does variability in normal tissue reactions after radiotherapy have a genetic basis--where and how to look for it?

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10.  Gene expression phenotype in heterozygous carriers of ataxia telangiectasia.

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Journal:  Am J Hum Genet       Date:  2002-09-11       Impact factor: 11.025

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  29 in total

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2.  Genetic dissection of gene expression observed in whole blood samples of elderly Danish twins.

Authors:  Qihua Tan; Kaare Christensen; Lene Christiansen; Henrik Frederiksen; Lise Bathum; Jesper Dahlgaard; Torben A Kruse
Journal:  Hum Genet       Date:  2005-05-20       Impact factor: 4.132

3.  DNA double-strand breaks: linking gene expression to chromosome morphology and mobility.

Authors:  Yang Zhang; Dieter W Heermann
Journal:  Chromosoma       Date:  2013-08-28       Impact factor: 4.316

4.  High-throughput antibody-based assays to identify and quantify radiation-responsive protein biomarkers.

Authors:  Michael A Partridge; Yunfei Chai; Hongning Zhou; Tom K Hei
Journal:  Int J Radiat Biol       Date:  2010-04       Impact factor: 2.694

Review 5.  Assessing cancer risks of low-dose radiation.

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6.  Differential and correlation analyses of microarray gene expression data in the CEPH Utah families.

Authors:  Qihua Tan; Jinghua Zhao; Shuxia Li; Lene Christiansen; Torben A Kruse; Kaare Christensen
Journal:  Genomics       Date:  2008-06-02       Impact factor: 5.736

7.  Modification in the expression of Mre11/Rad50/Nbs1 complex in low dose irradiated human lymphocytes.

Authors:  Sompal Singh; Madhu Bala; Raj Kumar; Anil Kumar; S C Dhiman
Journal:  Dose Response       Date:  2009-04-20       Impact factor: 2.658

8.  Genomic predictors of interindividual differences in response to DNA damaging agents.

Authors:  Rebecca C Fry; J Peter Svensson; Chandni Valiathan; Emma Wang; Brad J Hogan; Sanchita Bhattacharya; James M Bugni; Charles A Whittaker; Leona D Samson
Journal:  Genes Dev       Date:  2008-09-19       Impact factor: 11.361

9.  The effects of EBV transformation on gene expression levels and methylation profiles.

Authors:  Minal Caliskan; Darren A Cusanovich; Carole Ober; Yoav Gilad
Journal:  Hum Mol Genet       Date:  2011-02-02       Impact factor: 6.150

10.  Use of DNA-damaging agents and RNA pooling to assess expression profiles associated with BRCA1 and BRCA2 mutation status in familial breast cancer patients.

Authors:  Logan C Walker; Bryony A Thompson; Nic Waddell; Sean M Grimmond; Amanda B Spurdle
Journal:  PLoS Genet       Date:  2010-02-19       Impact factor: 5.917

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