Literature DB >> 15358859

Amine-synthesizing enzyme N-substituted formamide deformylase: screening, purification, characterization, and gene cloning.

Hiroshi Fukatsu1, Yoshiteru Hashimoto, Masahiko Goda, Hiroki Higashibata, Michihiko Kobayashi.   

Abstract

N-substituted formamide was produced through the hydration of an isonitrile by isonitrile hydratase in the isonitrile metabolism. The former compound was further degraded by a microorganism, strain F164, which was isolated from soil through an acclimatization culture. The N-substituted formamide-degrading microorganism was identified as Arthrobacter pascens. The microbial degradation was found to proceed through an enzymatic reaction, the N-substituted formamide being hydrolyzed to yield the corresponding amine and formate. The enzyme, designated as N-substituted formamide deformylase (NfdA), was purified and characterized. The native enzyme had a molecular mass of approximately 61 kDa and consisted of two identical subunits. It stoichiometrically catalyzed the hydrolysis of N-benzylformamide (an N-substituted formamide) to benzylamine and formate. Of all of the N-substituted formamides tested, N-benzylformamide was the most suitable substrate for the enzyme. However, no amides were accepted as substrates. The gene (nfdA) encoding this enzyme was also cloned. The deduced amino acid sequence of nfdA exhibited the highest overall sequence identity (28%) with those of regulatory proteins among known proteins. Only the N-terminal region (residues 58-72) of NfdA also showed significant sequence identity (27-73%) to that of each member of the amidohydrolase superfamily, although there was no similarity in the overall sequence except in the above limited region.

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Year:  2004        PMID: 15358859      PMCID: PMC518824          DOI: 10.1073/pnas.0405082101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  51 in total

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Journal:  Genetics       Date:  1956-07       Impact factor: 4.562

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Journal:  Nat Prod Rep       Date:  1988-06       Impact factor: 13.423

5.  Discovery of a novel enzyme, isonitrile hydratase, involved in nitrogen-carbon triple bond cleavage.

Authors:  M Goda; Y Hashimoto; S Shimizu; M Kobayashi
Journal:  J Biol Chem       Date:  2001-04-16       Impact factor: 5.157

6.  The binding of detergents to proteins. I. The maximum amount of dodecyl sulfate bound to proteins and the resistance to binding of several proteins.

Authors:  C A Nelson
Journal:  J Biol Chem       Date:  1971-06-25       Impact factor: 5.157

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Authors:  C G Bailey; C Wagner
Journal:  J Biol Chem       Date:  1974-07-25       Impact factor: 5.157

8.  Atrazine chlorohydrolase from Pseudomonas sp. strain ADP: gene sequence, enzyme purification, and protein characterization.

Authors:  M L de Souza; M J Sadowsky; L P Wackett
Journal:  J Bacteriol       Date:  1996-08       Impact factor: 3.490

9.  Transcriptional regulation of the Rhodococcus rhodochrous J1 nitA gene encoding a nitrilase.

Authors:  H Komeda; Y Hori; M Kobayashi; S Shimizu
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-01       Impact factor: 11.205

10.  Control of peptide deformylase activity by metal cations.

Authors:  S Ragusa; S Blanquet; T Meinnel
Journal:  J Mol Biol       Date:  1998-07-17       Impact factor: 5.469

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  9 in total

1.  A new synthetic route to N-benzyl carboxamides through the reverse reaction of N-substituted formamide deformylase.

Authors:  Yoshiteru Hashimoto; Toshihide Sakashita; Hiroshi Fukatsu; Hiroyoshi Sato; Michihiko Kobayashi
Journal:  Appl Environ Microbiol       Date:  2013-10-11       Impact factor: 4.792

2.  Natural low-molecular mass organic compounds with oxidase activity as organocatalysts.

Authors:  Tatsuya Nishiyama; Yoshiteru Hashimoto; Hitoshi Kusakabe; Takuto Kumano; Michihiko Kobayashi
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-19       Impact factor: 11.205

3.  Crystal structure of aldoxime dehydratase and its catalytic mechanism involved in carbon-nitrogen triple-bond synthesis.

Authors:  Junpei Nomura; Hiroshi Hashimoto; Takehiro Ohta; Yoshiteru Hashimoto; Koichi Wada; Yoshinori Naruta; Ken-Ichi Oinuma; Michihiko Kobayashi
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-04       Impact factor: 11.205

4.  AepA of Pectobacterium is not involved in the regulation of extracellular plant cell wall degrading enzymes production.

Authors:  Viia Kõiv; Liis Andresen; Andres Mäe
Journal:  Mol Genet Genomics       Date:  2010-04-13       Impact factor: 3.291

5.  Discovery of a reaction intermediate of aliphatic aldoxime dehydratase involving heme as an active center.

Authors:  Kazunobu Konishi; Takehiro Ohta; Ken-Ichi Oinuma; Yoshiteru Hashimoto; Teizo Kitagawa; Michihiko Kobayashi
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-06       Impact factor: 11.205

6.  Novel isonitrile hydratase involved in isonitrile metabolism.

Authors:  Hiroyoshi Sato; Yoshiteru Hashimoto; Hiroshi Fukatsu; Michihiko Kobayashi
Journal:  J Biol Chem       Date:  2010-09-07       Impact factor: 5.157

7.  Transcriptional regulation of the nitrile hydratase gene cluster in Pseudomonas chlororaphis B23.

Authors:  Toshihide Sakashita; Yoshiteru Hashimoto; Ken-ichi Oinuma; Michihiko Kobayashi
Journal:  J Bacteriol       Date:  2008-04-11       Impact factor: 3.490

8.  HylA, an alternative hydrolase for initiation of catabolism of the phenylurea herbicide linuron in Variovorax sp. strains.

Authors:  K Bers; I Batisson; P Proost; R Wattiez; R De Mot; D Springael
Journal:  Appl Environ Microbiol       Date:  2013-06-28       Impact factor: 4.792

9.  New function of aldoxime dehydratase: Redox catalysis and the formation of an unexpected product.

Authors:  Masatoshi Yamada; Yoshiteru Hashimoto; Takuto Kumano; Seiya Tsujimura; Michihiko Kobayashi
Journal:  PLoS One       Date:  2017-04-14       Impact factor: 3.240

  9 in total

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