Literature DB >> 15347590

Modeling feedback loops of the Mammalian circadian oscillator.

Sabine Becker-Weimann1, Jana Wolf, Hanspeter Herzel, Achim Kramer.   

Abstract

The suprachiasmatic nucleus governs daily variations of physiology and behavior in mammals. Within single neurons, interlocked transcriptional/translational feedback loops generate circadian rhythms on the molecular level. We present a mathematical model that reflects the essential features of the mammalian circadian oscillator to characterize the differential roles of negative and positive feedback loops. The oscillations that are obtained have a 24-h period and are robust toward parameter variations even when the positive feedback is replaced by a constantly expressed activator. This demonstrates the crucial role of the negative feedback for rhythm generation. Moreover, it explains the rhythmic phenotype of Rev-erbalpha-/- mutant mice, where a positive feedback is missing. The interplay of negative and positive feedback reveals a complex dynamics. In particular, the model explains the unexpected rescue of circadian oscillations in Per2Brdm1/Cry2-/- double-mutant mice (Per2Brdm1 single-mutant mice are arrhythmic). Here, a decrease of positive feedback strength associated with mutating the Per2 gene is compensated by the Cry2-/- mutation that simultaneously decreases the negative feedback strength. Finally, this model leads us to a testable prediction of a molecular and behavioral phenotype: circadian oscillations should be rescued when arrhythmic Per2Brdm1 mutant mice are crossed with Rev- erbalpha -/- mutant mice.

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Year:  2004        PMID: 15347590      PMCID: PMC1304775          DOI: 10.1529/biophysj.104.040824

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  51 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-15       Impact factor: 11.205

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3.  Targeted disruption of the mPer3 gene: subtle effects on circadian clock function.

Authors:  L P Shearman; X Jin; C Lee; S M Reppert; D R Weaver
Journal:  Mol Cell Biol       Date:  2000-09       Impact factor: 4.272

Review 4.  Coordination of circadian timing in mammals.

Authors:  Steven M Reppert; David R Weaver
Journal:  Nature       Date:  2002-08-29       Impact factor: 49.962

5.  Altered behavioral rhythms and clock gene expression in mice with a targeted mutation in the Period1 gene.

Authors:  N Cermakian; L Monaco; M P Pando; A Dierich; P Sassone-Corsi
Journal:  EMBO J       Date:  2001-08-01       Impact factor: 11.598

6.  Control of intracellular dynamics of mammalian period proteins by casein kinase I epsilon (CKIepsilon) and CKIdelta in cultured cells.

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Journal:  Mol Cell Biol       Date:  2002-03       Impact factor: 4.272

7.  Posttranslational mechanisms regulate the mammalian circadian clock.

Authors:  C Lee; J P Etchegaray; F R Cagampang; A S Loudon; S M Reppert
Journal:  Cell       Date:  2001-12-28       Impact factor: 41.582

8.  The circadian regulatory proteins BMAL1 and cryptochromes are substrates of casein kinase Iepsilon.

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Journal:  J Biol Chem       Date:  2002-03-01       Impact factor: 5.157

9.  The orphan nuclear receptor REV-ERBalpha controls circadian transcription within the positive limb of the mammalian circadian oscillator.

Authors:  Nicolas Preitner; Francesca Damiola; Luis Lopez-Molina; Joszef Zakany; Denis Duboule; Urs Albrecht; Ueli Schibler
Journal:  Cell       Date:  2002-07-26       Impact factor: 41.582

10.  A transcription factor response element for gene expression during circadian night.

Authors:  Hiroki R Ueda; Wenbin Chen; Akihito Adachi; Hisanori Wakamatsu; Satoko Hayashi; Tomohiro Takasugi; Mamoru Nagano; Ken-ichi Nakahama; Yutaka Suzuki; Sumio Sugano; Masamitsu Iino; Yasufumi Shigeyoshi; Seiichi Hashimoto
Journal:  Nature       Date:  2002-08-01       Impact factor: 49.962

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  58 in total

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2.  Synchronization and entrainment of coupled circadian oscillators.

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Journal:  Interface Focus       Date:  2010-10-13       Impact factor: 3.906

3.  Coupling Controls the Synchrony of Clock Cells in Development and Knockouts.

Authors:  Isao T Tokuda; Daisuke Ono; Bharath Ananthasubramaniam; Sato Honma; Ken-Ichi Honma; Hanspeter Herzel
Journal:  Biophys J       Date:  2015-11-17       Impact factor: 4.033

4.  Spontaneous synchronization of coupled circadian oscillators.

Authors:  Didier Gonze; Samuel Bernard; Christian Waltermann; Achim Kramer; Hanspeter Herzel
Journal:  Biophys J       Date:  2005-04-22       Impact factor: 4.033

Review 5.  Modelling biological complexity: a physical scientist's perspective.

Authors:  Peter V Coveney; Philip W Fowler
Journal:  J R Soc Interface       Date:  2005-09-22       Impact factor: 4.118

6.  A proposal for robust temperature compensation of circadian rhythms.

Authors:  Christian I Hong; Emery D Conrad; John J Tyson
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-17       Impact factor: 11.205

7.  Design principles for phase-splitting behaviour of coupled cellular oscillators: clues from hamsters with 'split' circadian rhythms.

Authors:  Premananda Indic; William J Schwartz; David Paydarfar
Journal:  J R Soc Interface       Date:  2008-08-06       Impact factor: 4.118

8.  Sensitivity Measures for Oscillating Systems: Application to Mammalian Circadian Gene Network.

Authors:  Stephanie R Taylor; Rudiyanto Gunawan; Linda R Petzold; Francis J Doyle
Journal:  IEEE Trans Automat Contr       Date:  2008-01-01       Impact factor: 5.792

9.  Quantification of circadian rhythms in single cells.

Authors:  Pål O Westermark; David K Welsh; Hitoshi Okamura; Hanspeter Herzel
Journal:  PLoS Comput Biol       Date:  2009-11-26       Impact factor: 4.475

10.  How to achieve fast entrainment? The timescale to synchronization.

Authors:  Adrián E Granada; Hanspeter Herzel
Journal:  PLoS One       Date:  2009-09-23       Impact factor: 3.240

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