Literature DB >> 15347570

ProViz: protein interaction visualization and exploration.

Florian Iragne1, Macha Nikolski, Bertrand Mathieu, David Auber, David Sherman.   

Abstract

UNLABELLED: ProViz is a tool for the visualization of protein-protein interaction networks, developed by the IntAct European project. It provides facilities for navigating in large graphs and exploring biologically relevant features, and adopts emerging standards such as GO and PSI-MI. AVAILABILITY: ProViz is available under the GPL and may be freely downloaded. Source code and binaries are available at http://cbi.labri.fr/eng/proviz.htm CONTACT: david.sherman@labri.fr

Entities:  

Mesh：

Substances：

Year:  2004        PMID： 15347570     DOI： 10.1093/bioinformatics/bth494

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  30 in total

1.  Functional atlas of the integrin adhesome.

Authors:  Ronen Zaidel-Bar; Shalev Itzkovitz; Avi Ma'ayan; Ravi Iyengar; Benjamin Geiger
Journal:  Nat Cell Biol       Date:  2007-08       Impact factor: 28.824

2.  Integration of biological networks and gene expression data using Cytoscape.

Authors:  Melissa S Cline; Michael Smoot; Ethan Cerami; Allan Kuchinsky; Nerius Landys; Chris Workman; Rowan Christmas; Iliana Avila-Campilo; Michael Creech; Benjamin Gross; Kristina Hanspers; Ruth Isserlin; Ryan Kelley; Sarah Killcoyne; Samad Lotia; Steven Maere; John Morris; Keiichiro Ono; Vuk Pavlovic; Alexander R Pico; Aditya Vailaya; Peng-Liang Wang; Annette Adler; Bruce R Conklin; Leroy Hood; Martin Kuiper; Chris Sander; Ilya Schmulevich; Benno Schwikowski; Guy J Warner; Trey Ideker; Gary D Bader
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

3.  VisANT: an integrative framework for networks in systems biology.

Authors:  Zhenjun Hu; Evan S Snitkin; Charles DeLisi
Journal:  Brief Bioinform       Date:  2008-05-07       Impact factor: 11.622

4.  Graphle: Interactive exploration of large, dense graphs.

Authors:  Curtis Huttenhower; Sajid O Mehmood; Olga G Troyanskaya
Journal:  BMC Bioinformatics       Date:  2009-12-14       Impact factor: 3.169

5.  Tracing the footsteps of autophagy in computational biology.

Authors:  Dipanka Tanu Sarmah; Nandadulal Bairagi; Samrat Chatterjee
Journal:  Brief Bioinform       Date:  2021-07-20       Impact factor: 11.622

6.  Protopia: a protein-protein interaction tool.

Authors:  Alejandro Real-Chicharro; Iván Ruiz-Mostazo; Ismael Navas-Delgado; Amine Kerzazi; Othmane Chniber; Francisca Sánchez-Jiménez; Miguel Angel Medina; José F Aldana-Montes
Journal:  BMC Bioinformatics       Date:  2009-10-15       Impact factor: 3.169

7.  Arena3D: visualization of biological networks in 3D.

Authors:  Georgios A Pavlopoulos; Seán I O'Donoghue; Venkata P Satagopam; Theodoros G Soldatos; Evangelos Pafilis; Reinhard Schneider
Journal:  BMC Syst Biol       Date:  2008-11-28

8.  POLAR MAPPER: a computational tool for integrated visualization of protein interaction networks and mRNA expression data.

Authors:  Joana P Gonçalves; Mário Grãos; André X C N Valente
Journal:  J R Soc Interface       Date:  2008-11-28       Impact factor: 4.118

9.  Snazer: the simulations and networks analyzer.

Authors:  Tommaso Mazza; Gennaro Iaccarino; Corrado Priami
Journal:  BMC Syst Biol       Date:  2010-01-07

10.  SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks.

Authors:  Pablo Minguez; Stefan Götz; David Montaner; Fatima Al-Shahrour; Joaquin Dopazo
Journal:  Nucleic Acids Res       Date:  2009-05-19       Impact factor: 16.971
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.