Literature DB >> 15342537

Evolution of specialists in an experimental microcosm.

Daniel E Dykhuizen1, Antony M Dean.   

Abstract

The impact of adaptation on the persistence of a balanced polymorphism was explored using the lactose operon of Escherichia coli as a model system. Competition in chemostats for two substitutable resources, methylgalactoside and lactulose, generates stabilizing frequency-dependent selection when two different naturally isolated lac operons (TD2 and TD10) are used. The fate of this balanced polymorphism was tracked over evolutionary time by monitoring the frequency of fhuA-, a linked neutral genetic marker that confers resistance to the bacteriophage T5. In four out of nine chemostats the lac polymorphism persisted for 400-600 generations when the experiments were terminated. In the other five chemostats the fhuA polymorphism, and consequently the lac operon polymorphism, was lost between 86 and 219 generations. Four of 13 chemostat cultures monomorphic for the lac operon retained the neutral fhuA polymorphism for 450-550 generations until they were terminated; the remainder became monomorphic at fhuA between 63 and 303 generations. Specialists on each galactoside were isolated from chemostats that maintained the fhuA polymorphism, whether polymorphic or monomorphic at the lac operon. Strains isolated from three of four chemostats in which the lac polymorphism was preserved had switched their galactoside preference. Most of the chemostats where the fhuA polymorphism was lost also contained specialists. These results demonstrate that the initial polymorphism at lac was of little consequence to the outcome of long-term adaptive evolution. Instead, the fitnesses of evolved strains were dominated by mutations arising elsewhere in the genome, a fact confirmed by showing that operons isolated from their evolved backgrounds were alone unable to explain the presence of both specialists. Our results suggest that, once stabilized, ecological specialization prevented selective sweeps through the entire population, thereby promoting the maintenance of linked neutral polymorphisms. Copyright 2004 Genetics Society of America

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Year:  2004        PMID: 15342537      PMCID: PMC1470984          DOI: 10.1534/genetics.103.025205

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  22 in total

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Authors:  T HORIUCHI; J I TOMIZAWA; A NOVICK
Journal:  Biochim Biophys Acta       Date:  1962-01-22

2.  Repeated evolution of an acetate-crossfeeding polymorphism in long-term populations of Escherichia coli.

Authors:  D S Treves; S Manning; J Adams
Journal:  Mol Biol Evol       Date:  1998-07       Impact factor: 16.240

3.  Adaptive radiation in a heterogeneous environment.

Authors:  P B Rainey; M Travisano
Journal:  Nature       Date:  1998-07-02       Impact factor: 49.962

4.  Evolution of Escherichia coli during growth in a constant environment.

Authors:  R B Helling; C N Vargas; J Adams
Journal:  Genetics       Date:  1987-07       Impact factor: 4.562

5.  Chemostats used for studying natural selection and adaptive evolution.

Authors:  D E Dykhuizen
Journal:  Methods Enzymol       Date:  1993       Impact factor: 1.600

6.  Periodic selection, infectious gene exchange and the genetic structure of E. coli populations.

Authors:  B R Levin
Journal:  Genetics       Date:  1981-09       Impact factor: 4.562

7.  Transport by the lactose permease of Escherichia coli as the basis of lactose killing.

Authors:  D Dykhuizen; D Hartl
Journal:  J Bacteriol       Date:  1978-09       Impact factor: 3.490

8.  OmpF changes and the complexity of Escherichia coli adaptation to prolonged lactose limitation.

Authors:  E Zhang; T Ferenci
Journal:  FEMS Microbiol Lett       Date:  1999-07-15       Impact factor: 2.742

9.  A molecular investigation of genotype by environment interactions.

Authors:  A M Dean
Journal:  Genetics       Date:  1995-01       Impact factor: 4.562

10.  Comparison of lactose uptake in resting and energized Escherichia coli cells: high rates of respiration inactivate the lac carrier.

Authors:  A Ghazi; H Therisod; E Shechter
Journal:  J Bacteriol       Date:  1983-04       Impact factor: 3.490

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  17 in total

Review 1.  Thoughts Toward a Theory of Natural Selection: The Importance of Microbial Experimental Evolution.

Authors:  Daniel Dykhuizen
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-01-08       Impact factor: 10.005

2.  Predicting metabolic adaptation from networks of mutational paths.

Authors:  Christos Josephides; Peter S Swain
Journal:  Nat Commun       Date:  2017-09-25       Impact factor: 14.919

3.  Coevolutionary arms races between bacteria and bacteriophage.

Authors:  J S Weitz; H Hartman; S A Levin
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-23       Impact factor: 11.205

4.  Transcription, translation, and the evolution of specialists and generalists.

Authors:  Shaobin Zhong; Stephen P Miller; Daniel E Dykhuizen; Antony M Dean
Journal:  Mol Biol Evol       Date:  2009-08-25       Impact factor: 16.240

5.  Evolutionary genomics of ecological specialization.

Authors:  Shaobin Zhong; Arkady Khodursky; Daniel E Dykhuizen; Antony M Dean
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-02       Impact factor: 11.205

6.  The cost of expression of Escherichia coli lac operon proteins is in the process, not in the products.

Authors:  Daniel M Stoebel; Antony M Dean; Daniel E Dykhuizen
Journal:  Genetics       Date:  2008-02-03       Impact factor: 4.562

7.  Mucoidy, a general mechanism for maintaining lytic phage in populations of bacteria.

Authors:  Waqas Chaudhry; Esther Lee; Andrew Worthy; Zoe Weiss; Marcin Grabowicz; Nicole Vega; Bruce Levin
Journal:  FEMS Microbiol Ecol       Date:  2020-10-02       Impact factor: 4.194

8.  Designing antibiotic cycling strategies by determining and understanding local adaptive landscapes.

Authors:  Christiane P Goulart; Mentar Mahmudi; Kristina A Crona; Stephen D Jacobs; Marcelo Kallmann; Barry G Hall; Devin C Greene; Miriam Barlow
Journal:  PLoS One       Date:  2013-02-13       Impact factor: 3.240

9.  The multiplicity of divergence mechanisms in a single evolving population.

Authors:  Ram P Maharjan; Thomas Ferenci; Peter R Reeves; Yang Li; Bin Liu; Lei Wang
Journal:  Genome Biol       Date:  2012-06-08       Impact factor: 13.583

10.  Escherichia coli ATCC 8739 Adapts to the Presence of Sodium Chloride, Monosodium Glutamate, and Benzoic Acid after Extended Culture.

Authors:  Chin How Lee; Jack S H Oon; Kun Cheng Lee; Maurice H T Ling
Journal:  ISRN Microbiol       Date:  2012-03-05
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