Literature DB >> 15340837

The cytoplasmic male-sterile type and normal type mitochondrial genomes of sugar beet share the same complement of genes of known function but differ in the content of expressed ORFs.

M Satoh1, T Kubo, S Nishizawa, A Estiati, N Itchoda, T Mikami.   

Abstract

The complete nucleotide sequence (501,020 bp) of the mitochondrial genome from cytoplasmic male-sterile (CMS) sugar beet was determined. This enabled us to compare the sequence with that previously published for the mitochondrial genome of normal, male-fertile sugar beet. The comparison revealed that the two genomes have the same complement of genes of known function. The rRNA and tRNA genes encoded in the CMS mitochondrial genome share 100% sequence identity with their respective counterparts in the normal genome. We found a total of 24 single nucleotide substitutions in 11 protein genes encoded by the CMS mitochondrial genome. However, none of these seems to be responsible for male sterility. In addition, several other ORFs were found to be actively transcribed in sugar beet mitochondria. Among these, Norf246 was observed to be present in the normal mitochondrial genome but absent from the CMS genome. However, it seems unlikely that the loss of Norf246 is causally related to the expression of CMS, because previous studies on mitochondrial translation products failed to detect the product of this ORF. Conversely, the CMS genome contains four transcribed ORFs (Satp6presequence, Scox2-2 , Sorf324 and Sorf119) which are missing from the normal genome. These ORFs, which are potential candidates for CMS genes, were shown to be generated by mitochondrial genome rearrangements.

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Year:  2004        PMID: 15340837     DOI: 10.1007/s00438-004-1058-9

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   3.291


  14 in total

1.  Alterations in organization and transcription of the mitochondrial genome of cytoplasmic male sterile sugar beet (Beta vulgaris L.).

Authors:  T Kubo; S Nishizawa; T Mikami
Journal:  Mol Gen Genet       Date:  1999-09

2.  Expression of the wheat mitochondrial nad3-rps12 transcription unit: correlation between editing and mRNA maturation.

Authors:  J M Gualberto; G Bonnard; L Lamattina; J M Grienenberger
Journal:  Plant Cell       Date:  1991-10       Impact factor: 11.277

3.  Genomic organization and sequence analysis of the cytochrome oxidase subunit II gene from normal and male-sterile mitochondria in sugar beet.

Authors:  M Senda; T Harada; T Mikami; M Sugiura; T Kinoshita
Journal:  Curr Genet       Date:  1991-03       Impact factor: 3.886

4.  A duplicated sequence in sugarbeet mitochondrial transcripts is differentially edited: analysis of orfB and its derivative orf324 mRNAs.

Authors:  T Kubo; T Mikami
Journal:  Biochim Biophys Acta       Date:  1996-07-17

Review 5.  Mitochondrial DNA mutations and pathogenesis.

Authors:  E A Schon; E Bonilla; S DiMauro
Journal:  J Bioenerg Biomembr       Date:  1997-04       Impact factor: 2.945

6.  The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris L.) reveals a novel gene for tRNA(Cys)(GCA).

Authors:  T Kubo; S Nishizawa; A Sugawara; N Itchoda; A Estiati; T Mikami
Journal:  Nucleic Acids Res       Date:  2000-07-01       Impact factor: 16.971

7.  The sugar beet mitochondrial gene for the ATPase alpha-subunit: sequence, transcription and rearrangements in cytoplasmic male-sterile plants.

Authors:  M Senda; T Mikami; T Kinoshita
Journal:  Curr Genet       Date:  1993 Jul-Aug       Impact factor: 3.886

8.  Variable number of tandem repeat loci in the mitochondrial genomes of beets.

Authors:  S Nishizawa; T Kubo; T Mikami
Journal:  Curr Genet       Date:  2000-01       Impact factor: 3.886

9.  The sugar beet mitochondrial nad4 gene: an intron loss and its phylogenetic implication in the Caryophyllales.

Authors:  N. Itchoda; S. Nishizawa; H. Nagano; T. Kubo; T. Mikami
Journal:  Theor Appl Genet       Date:  2002-02       Impact factor: 5.699

10.  Deletion of the last two exons of the mitochondrial nad7 gene results in lack of the NAD7 polypeptide in a Nicotiana sylvestris CMS mutant.

Authors:  M Pla; C Mathieu; R De Paepe; P Chétrit; F Vedel
Journal:  Mol Gen Genet       Date:  1995-07-22
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  45 in total

1.  A ras GTPase-activating protein-binding protein, TaG3BP, associated with the modulation of male fertility in a thermo-sensitive cytoplasmic male sterile wheat line.

Authors:  Linlin Zhou; Guoqi Song; Beiru He; Yin-Gang Hu
Journal:  Mol Genet Genomics       Date:  2011-11-11       Impact factor: 3.291

2.  The 5'-leader sequence of sugar beet mitochondrial atp6 encodes a novel polypeptide that is characteristic of Owen cytoplasmic male sterility.

Authors:  Masayuki P Yamamoto; Tomohiko Kubo; Tetsuo Mikami
Journal:  Mol Genet Genomics       Date:  2005-04-19       Impact factor: 3.291

3.  Molecular mapping of a fertility restorer gene for Owen cytoplasmic male sterility in sugar beet.

Authors:  E Hagihara; N Itchoda; Y Habu; S Iida; T Mikami; T Kubo
Journal:  Theor Appl Genet       Date:  2005-06-08       Impact factor: 5.699

4.  Estimation of stoichiometry of marker sequences of the sugar beet (Beta vulgaris) mitochondrial genome by real-time PCR.

Authors:  A G Bragin; M K Ivanov; G M Dymshits
Journal:  Dokl Biol Sci       Date:  2006 Jan-Feb

5.  Patterns of partial RNA editing in mitochondrial genes of Beta vulgaris.

Authors:  Jeffrey P Mower; Jeffrey D Palmer
Journal:  Mol Genet Genomics       Date:  2006-07-22       Impact factor: 3.291

6.  The Owen mitochondrial genome in sugar beet (Beta vulgaris L.): possible mechanisms of extensive rearrangements and the origin of the mitotype-unique regions.

Authors:  Mizuho Satoh; Tomohiko Kubo; Tetsuo Mikami
Journal:  Theor Appl Genet       Date:  2006-05-31       Impact factor: 5.699

7.  Discovery of global genomic re-organization based on comparison of two newly sequenced rice mitochondrial genomes with cytoplasmic male sterility-related genes.

Authors:  Sota Fujii; Tomohiko Kazama; Mari Yamada; Kinya Toriyama
Journal:  BMC Genomics       Date:  2010-03-29       Impact factor: 3.969

Review 8.  Current understanding of male sterility systems in vegetable Brassicas and their exploitation in hybrid breeding.

Authors:  Saurabh Singh; S S Dey; Reeta Bhatia; Raj Kumar; T K Behera
Journal:  Plant Reprod       Date:  2019-05-03       Impact factor: 3.767

9.  Emergence of gynodioecy in wild beet (Beta vulgaris ssp. maritima L.): a genealogical approach using chloroplastic nucleotide sequences.

Authors:  Stéphane Fénart; Pascal Touzet; Jean-François Arnaud; Joël Cuguen
Journal:  Proc Biol Sci       Date:  2006-06-07       Impact factor: 5.349

10.  A scenario of mitochondrial genome evolution in maize based on rearrangement events.

Authors:  Aude Darracq; Jean-Stéphane Varré; Pascal Touzet
Journal:  BMC Genomics       Date:  2010-04-09       Impact factor: 3.969

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