Literature DB >> 10672442

Variable number of tandem repeat loci in the mitochondrial genomes of beets.

S Nishizawa1, T Kubo, T Mikami.   

Abstract

We found four unrelated tandem repeat loci (TR1, TR2, TR3 and TR4) in the mitochondrial genomes of beets, with the TR1 locus embedded within a three-membered family of recombining repeat sequences (the rrn26-repeat). TR1 is composed of an array of 32-bp tandem repeats, the number of which varies from 2 to 13 among the seven beet genotypes examined. It is interesting to note that TR1 has 7-bp direct repeats flanking the array, which may be involved in the generation of the tandem repeat array. Such striking features are shared by the remaining TR loci, and this is thus the first description of minisatellite nucleotide sequences from a higher-plant mitochondrial genome.

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Year:  2000        PMID: 10672442     DOI: 10.1007/s002940050005

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  13 in total

1.  The cytoplasmic male-sterile type and normal type mitochondrial genomes of sugar beet share the same complement of genes of known function but differ in the content of expressed ORFs.

Authors:  M Satoh; T Kubo; S Nishizawa; A Estiati; N Itchoda; T Mikami
Journal:  Mol Genet Genomics       Date:  2004-09-01       Impact factor: 3.291

2.  Patterns of partial RNA editing in mitochondrial genes of Beta vulgaris.

Authors:  Jeffrey P Mower; Jeffrey D Palmer
Journal:  Mol Genet Genomics       Date:  2006-07-22       Impact factor: 3.291

3.  Evolution of an ancient microsatellite hotspot in the conifer mitochondrial genome and comparison with other plants.

Authors:  Juan P Jaramillo-Correa; Erika Aguirre-Planter; Luis E Eguiarte; Damase P Khasa; Jean Bousquet
Journal:  J Mol Evol       Date:  2013-03       Impact factor: 2.395

4.  Polymorphic minisatellites in the mitochondrial DNAs of Oryza and Brassica.

Authors:  Yujiro Honma; Yu Yoshida; Toru Terachi; Kinya Toriyama; Tetsuo Mikami; Tomohiko Kubo
Journal:  Curr Genet       Date:  2011-05-12       Impact factor: 3.886

5.  Identification of molecular variants of the nonrestoring restorer-of-fertility 1 allele in sugar beet (Beta vulgaris L.).

Authors:  Takashi Ohgami; Daisuke Uchiyama; Sachiyo Ue; Rika Yui-Kurino; Yu Yoshida; Yoko Kamei; Yosuke Kuroda; Kazunori Taguchi; Tomohiko Kubo
Journal:  Theor Appl Genet       Date:  2015-12-29       Impact factor: 5.699

6.  Mitochondrial DNA phylogeny of cultivated and wild beets: relationships among cytoplasmic male-sterility-inducing and nonsterilizing cytoplasms.

Authors:  Satsuki Nishizawa; Tetsuo Mikami; Tomohiko Kubo
Journal:  Genetics       Date:  2007-08-24       Impact factor: 4.562

7.  Characterization of a mosaic minisatellite locus in the mitochondrial DNA of Norway spruce [Picea abies (L.) Karst.].

Authors:  D Bastien; J M Favre; A M Collignon; C Sperisen; S Jeandroz
Journal:  Theor Appl Genet       Date:  2003-05-15       Impact factor: 5.699

8.  Nuclear and cytoplasmic genetic diversity in weed beet and sugar beet accessions compared to wild relatives: new insights into the genetic relationships within the Beta vulgaris complex species.

Authors:  Stéphane Fénart; Jean-François Arnaud; Isabelle De Cauwer; Joël Cuguen
Journal:  Theor Appl Genet       Date:  2008-05       Impact factor: 5.699

9.  Identification and characterization of a semi-dominant restorer-of-fertility 1 allele in sugar beet (Beta vulgaris).

Authors:  Takumi Arakawa; Sachiyo Ue; Chihiro Sano; Muneyuki Matsunaga; Hiroyo Kagami; Yu Yoshida; Yosuke Kuroda; Kazunori Taguchi; Kazuyoshi Kitazaki; Tomohiko Kubo
Journal:  Theor Appl Genet       Date:  2018-10-19       Impact factor: 5.699

10.  Transposable elements are a significant contributor to tandem repeats in the human genome.

Authors:  Musaddeque Ahmed; Ping Liang
Journal:  Comp Funct Genomics       Date:  2012-06-24
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