Literature DB >> 15325657

Crystallization of RNA and RNA-protein complexes.

Ailong Ke1, Jennifer A Doudna.   

Abstract

RNA plays a direct role in a variety of cellular activities, and in many cases its biological function is conferred by the RNA three-dimensional structure. X-ray crystallography is the method of choice for determining high resolution structures of large RNA molecules, and can also be used to compare related RNAs and identify conformational changes that may accompany biochemical activity. However, crystallization remains the rate-limiting step in RNA structure determination due to the difficulty in obtaining well-ordered crystals for X-ray diffraction analysis. Several approaches to sample preparation, crystallization, and crystal handling are presented that have been used successfully in the structure determination of RNA and RNA-protein complexes in our laboratory, and should be generally applicable to RNAs in other systems.

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Year:  2004        PMID: 15325657     DOI: 10.1016/j.ymeth.2004.03.027

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  66 in total

1.  Crystal structure of an RNA polymerase ribozyme in complex with an antibody fragment.

Authors:  Joseph A Piccirilli; Yelena Koldobskaya
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-10-27       Impact factor: 6.237

Review 2.  Using nanoliter plugs in microfluidics to facilitate and understand protein crystallization.

Authors:  Bo Zheng; Cory J Gerdts; Rustem F Ismagilov
Journal:  Curr Opin Struct Biol       Date:  2005-10       Impact factor: 6.809

3.  Efficient substrate cleavage catalyzed by hammerhead ribozymes derivatized with selenium for X-ray crystallography.

Authors:  Gary Brandt; Nicolas Carrasco; Zhen Huang
Journal:  Biochemistry       Date:  2006-07-25       Impact factor: 3.162

Review 4.  RNA nanotechnology: engineering, assembly and applications in detection, gene delivery and therapy.

Authors:  Peixuan Guo
Journal:  J Nanosci Nanotechnol       Date:  2005-12

Review 5.  Searching for IRES.

Authors:  Stephen D Baird; Marcel Turcotte; Robert G Korneluk; Martin Holcik
Journal:  RNA       Date:  2006-09-06       Impact factor: 4.942

6.  A general strategy to solve the phase problem in RNA crystallography.

Authors:  Amanda Y Keel; Robert P Rambo; Robert T Batey; Jeffrey S Kieft
Journal:  Structure       Date:  2007-07       Impact factor: 5.006

7.  Crystal structures of the SAM-III/S(MK) riboswitch reveal the SAM-dependent translation inhibition mechanism.

Authors:  Changrui Lu; Angela M Smith; Ryan T Fuchs; Fang Ding; Kanagalaghatta Rajashankar; Tina M Henkin; Ailong Ke
Journal:  Nat Struct Mol Biol       Date:  2008-09-21       Impact factor: 15.369

8.  Solution structure of RNase P RNA.

Authors:  Alexei V Kazantsev; Robert P Rambo; Sina Karimpour; John Santalucia; John A Tainer; Norman R Pace
Journal:  RNA       Date:  2011-04-29       Impact factor: 4.942

9.  Structural determinants for geometry and information decoding of tRNA by T box leader RNA.

Authors:  Jason C Grigg; Ailong Ke
Journal:  Structure       Date:  2013-10-03       Impact factor: 5.006

10.  Cas5d protein processes pre-crRNA and assembles into a cascade-like interference complex in subtype I-C/Dvulg CRISPR-Cas system.

Authors:  Ki Hyun Nam; Charles Haitjema; Xueqi Liu; Fran Ding; Hongwei Wang; Matthew P DeLisa; Ailong Ke
Journal:  Structure       Date:  2012-07-26       Impact factor: 5.006

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