Literature DB >> 15325649

Effects of naturally occurring osmolytes on protein stability and solubility: issues important in protein crystallization.

D W Bolen1.   

Abstract

Protein solubility and stability are issues of consideration in attempts to crystallize proteins. These two properties of proteins are also at issue in the cells of organisms that have adapted to water stress conditions that could ordinarily denature or inactivate some proteins. Most organisms that have adapted to environmental stresses have done so by production and accumulation of certain small organic molecules, known as osmolytes, that arose by natural selection and have the ability to stabilize intracellular proteins against the environmental stress. Here, concepts developed to understand the special properties of the naturally occurring osmolytes in effecting protein stability and solubility, and the principles that have come from studies of these compounds have been presented. Along with excluded volume and preferential interaction parameters, identification of the osmophobic effect and the attenuation of this effect by favorable interactions of solute with side-chains appear to contribute to the full set of effects protecting osmolytes have on protein stability and solubility. With these concepts in mind and the fact that urea interacts favorably with the peptide backbone we note that: (1) osmolyte-induced effects on protein stability ranging from denaturation to forcing proteins to fold can be achieved experimentally and the underlying principles understood at near molecular-level detail, and (2) osmolyte-mediated solubility effects ranging from protein precipitation to protein solubilization are predictable based on these principles. These effects are contrasted and compared with effects of 2-methyl-2,4-pentanediol and polyethylene glycol on proteins, and how the principles found for the naturally occurring osmolytes can be applied to these two commonly used protein crystallizing agents.

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Year:  2004        PMID: 15325649     DOI: 10.1016/j.ymeth.2004.03.022

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  40 in total

1.  Inhibition of protein aggregation in vitro and in vivo by a natural osmoprotectant.

Authors:  Zoya Ignatova; Lila M Gierasch
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-09       Impact factor: 11.205

2.  Solutes modify a conformational transition in a membrane transport protein.

Authors:  Miyeon Kim; Qi Xu; Gail E Fanucci; David S Cafiso
Journal:  Biophys J       Date:  2006-01-27       Impact factor: 4.033

3.  From the test tube to the cell: exploring the folding and aggregation of a beta-clam protein.

Authors:  Zoya Ignatova; Beena Krishnan; Jeffrey P Bombardier; Anna Marie C Marcelino; Jiang Hong; Lila M Gierasch
Journal:  Biopolymers       Date:  2007       Impact factor: 2.505

4.  Influence of polyols on the stability and kinetic parameters of invertase from Candida utilis: correlation with the conformational stability and activity.

Authors:  Parigi Ramesh Kumar; Vishweshwaraiah Prakash
Journal:  Protein J       Date:  2008-12       Impact factor: 2.371

5.  Stability of beta-lactoglobulin A in the presence of sugar osmolytes estimated from their guanidinium chloride-induced transition curves.

Authors:  Zohreh Saadati; Abdol-Khalegh Bordbar
Journal:  Protein J       Date:  2008-12       Impact factor: 2.371

6.  Two disaccharides and trimethylamine N-oxide affect Abeta aggregation differently, but all attenuate oligomer-induced membrane permeability.

Authors:  Wei Qi; Aming Zhang; Theresa A Good; Erik J Fernandez
Journal:  Biochemistry       Date:  2009-09-22       Impact factor: 3.162

Review 7.  Living with urea stress.

Authors:  Laishram R Singh; Tanveer Ali Dar; Faizan Ahmad
Journal:  J Biosci       Date:  2009-06       Impact factor: 1.826

8.  Osmolytes modulate conformational exchange in solvent-exposed regions of membrane proteins.

Authors:  Ricardo H Flores Jiménez; Marie-Ange Do Cao; Miyeon Kim; David S Cafiso
Journal:  Protein Sci       Date:  2010-02       Impact factor: 6.725

9.  An overview of the importance of conformational flexibility in gene regulation by the transcription factors.

Authors:  Shagufta H Khan; Raj Kumar
Journal:  J Biophys       Date:  2010-02-04

10.  Hydrogen bonding progressively strengthens upon transfer of the protein urea-denatured state to water and protecting osmolytes.

Authors:  Luis Marcelo F Holthauzen; Jörg Rösgen; D Wayne Bolen
Journal:  Biochemistry       Date:  2010-02-16       Impact factor: 3.162

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