Literature DB >> 15317998

Measurement of intermediate exchange phenomena.

James G Kempf1, J Patrick Loria.   

Abstract

Understanding the crucial role of protein motions in the function of biological macromolecules requires methods for their characterization. These motions lead to noticeable alterations in the decay of nuclear spin magnetization. Recent advances in solution nuclear magnetic resonance (NMR) make quantitative connections between micro s-ms motions and nuclear spin relaxation in proteins. The techniques serve as useful probes of motional kinetics and thermodynamics and their relation to function. Here, we review the two most common experimental methods for characterizing conformational motions in proteins: the relaxation-compensated Carr-Purcell-Meiboom-Gill (rcCPMG) and off-resonance R1rho experiments.

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Year:  2004        PMID: 15317998     DOI: 10.1385/1-59259-809-9:185

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  11 in total

Review 1.  Solution NMR Spectroscopy for the Study of Enzyme Allostery.

Authors:  George P Lisi; J Patrick Loria
Journal:  Chem Rev       Date:  2016-01-06       Impact factor: 60.622

Review 2.  Conformational Sub-states and Populations in Enzyme Catalysis.

Authors:  P K Agarwal; N Doucet; C Chennubhotla; A Ramanathan; C Narayanan
Journal:  Methods Enzymol       Date:  2016-07-09       Impact factor: 1.600

Review 3.  Applications of NMR and computational methodologies to study protein dynamics.

Authors:  Chitra Narayanan; Khushboo Bafna; Louise D Roux; Pratul K Agarwal; Nicolas Doucet
Journal:  Arch Biochem Biophys       Date:  2017-05-05       Impact factor: 4.013

4.  Ligand Binding Enhances Millisecond Conformational Exchange in Xylanase B2 from Streptomyces lividans.

Authors:  Donald Gagné; Chitra Narayanan; Nhung Nguyen-Thi; Louise D Roux; David N Bernard; Joseph S Brunzelle; Jean-François Couture; Pratul K Agarwal; Nicolas Doucet
Journal:  Biochemistry       Date:  2016-07-21       Impact factor: 3.162

Review 5.  Recent advances in solid-state nuclear magnetic resonance techniques to quantify biomolecular dynamics.

Authors:  Eric D Watt; Chad M Rienstra
Journal:  Anal Chem       Date:  2014-01-07       Impact factor: 6.986

6.  Significant Loop Motions in the SsoPTP Protein Tyrosine Phosphatase Allow for Dual General Acid Functionality.

Authors:  Justin Pinkston; Jihye Jo; Keith J Olsen; Drake Comer; Charsti A Glaittli; J Patrick Loria; Sean J Johnson; Alvan C Hengge
Journal:  Biochemistry       Date:  2021-09-08       Impact factor: 3.321

7.  Allosteric activation of the Par-6 PDZ via a partial unfolding transition.

Authors:  Dustin S Whitney; Francis C Peterson; Evgenii L Kovrigin; Brian F Volkman
Journal:  J Am Chem Soc       Date:  2013-06-12       Impact factor: 15.419

8.  Helix stabilization precedes aqueous and bilayer-catalyzed fiber formation in islet amyloid polypeptide.

Authors:  Jessica A Williamson; J Patrick Loria; Andrew D Miranker
Journal:  J Mol Biol       Date:  2009-07-30       Impact factor: 5.469

9.  Hydrogen exchange of monomeric alpha-synuclein shows unfolded structure persists at physiological temperature and is independent of molecular crowding in Escherichia coli.

Authors:  Robyn L Croke; Christine O Sallum; Emma Watson; Eric D Watt; Andrei T Alexandrescu
Journal:  Protein Sci       Date:  2008-05-20       Impact factor: 6.725

10.  Elucidating a relationship between conformational sampling and drug resistance in HIV-1 protease.

Authors:  Ian Mitchelle S de Vera; Adam N Smith; Maria Cristina A Dancel; Xi Huang; Ben M Dunn; Gail E Fanucci
Journal:  Biochemistry       Date:  2013-05-01       Impact factor: 3.162

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