Literature DB >> 15317800

Characterization of the upper pathway genes for fluorene metabolism in Terrabacter sp. strain DBF63.

Hiroshi Habe1, Jin-Sung Chung, Hiroyuki Kato, Yuko Ayabe, Kano Kasuga, Takako Yoshida, Hideaki Nojiri, Hisakazu Yamane, Toshio Omori.   

Abstract

Genes involved in the degradation of fluorene to phthalate were characterized in the fluorene degrader Terrabacter sp. strain DBF63. The initial attack on both fluorene and 9-fluorenone was catalyzed by DbfA to yield 9-fluorenol and 1,1a-dihydroxy-1-hydro-9-fluorenone, respectively. The FlnB protein exhibited activities against both 9-fluorenol and 1,1a-dihydroxy-1-hydro-9-fluorenone to produce 9-fluorenone and 2'-carboxy-2,3-dihydroxybiphenyl, respectively. FlnD is a heteromeric protein encoded by flnD1 and ORF16, being a member of the class III two-subunit extradiol dioxygenase. FlnE was identified as a serine hydrolase for the meta-cleavage products that yield phthalate.

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Year:  2004        PMID： 15317800      PMCID： PMC516849          DOI： 10.1128/JB.186.17.5938-5944.2004

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  23 in total

1.  Expression, purification, and characterization of 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase from carbazole-degrader Pseudomonas resinovorans strain CA10.

Authors:  Kenichi Iwata; Hideaki Nojiri; Kentaro Shimizu; Takako Yoshida; Hiroshi Habe; Toshio Omori
Journal:  Biosci Biotechnol Biochem       Date:  2003-02       Impact factor: 2.043

2.  Dioxygenolytic cleavage of aryl ether bonds: 1,10-dihydro-1,10-dihydroxyfluoren-9-one, a novel arene dihydrodiol as evidence for angular dioxygenation of dibenzofuran.

Authors:  K H Engesser; V Strubel; K Christoglou; P Fischer; H G Rast
Journal:  FEMS Microbiol Lett       Date:  1989-11       Impact factor: 2.742

3.  Identification of a serine hydrolase which cleaves the alicyclic ring of tetralin.

Authors:  M J Hernáez; E Andújar; J L Ríos; S R Kaschabek; W Reineke; E Santero
Journal:  J Bacteriol       Date:  2000-10       Impact factor: 3.490

4.  Isolation and characterization of dibenzofuran-degrading actinomycetes: analysis of multiple extradiol dioxygenase genes in dibenzofuran-degrading Rhodococcus species.

Authors:  Toshiya Iida; Yuki Mukouzaka; Kaoru Nakamura; Isamu Yamaguchi; Toshiaki Kudo
Journal:  Biosci Biotechnol Biochem       Date:  2002-07       Impact factor: 2.043

5.  Degradation of fluorene by Brevibacterium sp. strain DPO 1361: a novel C-C bond cleavage mechanism via 1,10-dihydro-1,10-dihydroxyfluoren-9-one.

Authors:  S P Trenz; K H Engesser; P Fischer; H J Knackmuss
Journal:  J Bacteriol       Date:  1994-02       Impact factor: 3.490

6.  Transformation of Substituted Fluorenes and Fluorene Analogs by Pseudomonas sp. Strain F274.

Authors:  M Grifoll; S A Selifonov; P J Chapman
Journal:  Appl Environ Microbiol       Date:  1995-09       Impact factor: 4.792

7.  p-Cumate catabolic pathway in Pseudomonas putida Fl: cloning and characterization of DNA carrying the cmt operon.

Authors:  R W Eaton
Journal:  J Bacteriol       Date:  1996-03       Impact factor: 3.490

8.  Isolation and characterization of a fluorene-degrading bacterium: identification of ring oxidation and ring fission products.

Authors:  M Grifoll; M Casellas; J M Bayona; A M Solanas
Journal:  Appl Environ Microbiol       Date:  1992-09       Impact factor: 4.792

9.  Phthalate catabolic gene cluster is linked to the angular dioxygenase gene in Terrabacter sp. strain DBF63.

Authors:  H Habe; M Miyakoshi; J Chung; K Kasuga; T Yoshida; H Nojiri; T Omori
Journal:  Appl Microbiol Biotechnol       Date:  2002-12-19       Impact factor: 4.813

10.  Isolation and characterization of (+)-1,1a-dihydroxy-1-hydrofluoren-9-one formed by angular dioxygenation in the bacterial catabolism of fluorene.

Authors:  S A Selifonov; M Grifoll; J E Gurst; P J Chapman
Journal:  Biochem Biophys Res Commun       Date:  1993-05-28       Impact factor: 3.575
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  8 in total

1.  The Sphingomonas plasmid pCAR3 is involved in complete mineralization of carbazole.

Authors:  Masaki Shintani; Masaaki Urata; Kengo Inoue; Kaori Eto; Hiroshi Habe; Toshio Omori; Hisakazu Yamane; Hideaki Nojiri
Journal:  J Bacteriol       Date:  2006-12-15       Impact factor: 3.490

2.  Screening and Identification of Metacaspase Inhibitors: Evaluation of Inhibition Mechanism and Trypanocidal Activity.

Authors:  Brian Pérez; León A Bouvier; Juan José Cazzulo; Fernán Agüero; Emir Salas-Sarduy; Vanina E Alvarez
Journal:  Antimicrob Agents Chemother       Date:  2021-02-17       Impact factor: 5.191

3.  Characterization of a novel angular dioxygenase from fluorene-degrading Sphingomonas sp. strain LB126.

Authors:  Luc Schuler; Sinéad M Ní Chadhain; Yves Jouanneau; Christine Meyer; Gerben J Zylstra; Pascal Hols; Spiros N Agathos
Journal:  Appl Environ Microbiol       Date:  2007-12-21       Impact factor: 4.792

4.  A polyomic approach to elucidate the fluoranthene-degradative pathway in Mycobacterium vanbaalenii PYR-1.

Authors:  Ohgew Kweon; Seong-Jae Kim; Richard C Jones; James P Freeman; Michael D Adjei; Ricky D Edmondson; Carl E Cerniglia
Journal:  J Bacteriol       Date:  2007-04-20       Impact factor: 3.490

5.  Efficient biodegradation of petroleum n-alkanes and polycyclic aromatic hydrocarbons by polyextremophilic Pseudomonas aeruginosa san ai with multidegradative capacity.

Authors:  Ana Medić; Marija Lješević; Hideyuku Inui; Vladimir Beškoski; Ivan Kojić; Ksenija Stojanović; Ivanka Karadžić
Journal:  RSC Adv       Date:  2020-04-07       Impact factor: 4.036

6.  In silico prediction of the enzymes involved in the degradation of the herbicide molinate by Gulosibacter molinativorax ON4T.

Authors:  A R Lopes; E Bunin; A T Viana; H Froufe; A Muñoz-Merida; D Pinho; J Figueiredo; C Barroso; I Vaz-Moreira; X Bellanger; C Egas; O C Nunes
Journal:  Sci Rep       Date:  2022-09-15       Impact factor: 4.996

Review 7.  Bacterial degradation of aromatic compounds.

Authors:  Jong-Su Seo; Young-Soo Keum; Qing X Li
Journal:  Int J Environ Res Public Health       Date:  2009-01-13       Impact factor: 3.390

Review 8.  Petroleum Hydrocarbon Contamination in Terrestrial Ecosystems-Fate and Microbial Responses.

Authors:  Adam Truskewycz; Taylor D Gundry; Leadin S Khudur; Adam Kolobaric; Mohamed Taha; Arturo Aburto-Medina; Andrew S Ball; Esmaeil Shahsavari
Journal:  Molecules       Date:  2019-09-19       Impact factor: 4.411
  8 in total

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