Literature DB >> 15315638

Chromatin techniques for plant cells.

Chris Bowler1, Giovanna Benvenuto, Pierre Laflamme, Diana Molino, Aline V Probst, Muhammad Tariq, Jerzy Paszkowski.   

Abstract

A large number of recent studies have demonstrated that many important aspects of plant development are regulated by heritable changes in gene expression that do not involve changes in DNA sequence. Rather, these regulatory mechanisms involve modifications of chromatin structure that affect the accessibility of target genes to regulatory factors that can control their expression. The central component of chromatin is the nucleosome, containing the highly conserved histone proteins that are known to be subject to a wide range of post-translational modifications, which act as recognition codes for the binding of chromatin-associated factors. In addition to these histone modifications, DNA methylation can also have a dramatic influence on gene expression. To accommodate the burgeoning interest of the plant science community in the epigenetic control of plant development, a series of methods used routinely in our laboratories have been compiled that can facilitate the characterization of putative chromatin-binding factors at the biochemical, molecular and cellular levels.

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Year:  2004        PMID: 15315638     DOI: 10.1111/j.1365-313X.2004.02169.x

Source DB:  PubMed          Journal:  Plant J        ISSN: 0960-7412            Impact factor:   6.417


  172 in total

1.  Transcriptional control of aspartate kinase expression during darkness and sugar depletion in Arabidopsis: involvement of bZIP transcription factors.

Authors:  Shai Ufaz; Vijaya Shukla; Yulia Soloveichik; Yelena Golan; Frank Breuer; Zsuzsa Koncz; Gad Galili; Csaba Koncz; Aviah Zilberstein
Journal:  Planta       Date:  2011-01-30       Impact factor: 4.116

2.  The ABORTED MICROSPORES regulatory network is required for postmeiotic male reproductive development in Arabidopsis thaliana.

Authors:  Jie Xu; Caiyun Yang; Zheng Yuan; Dasheng Zhang; Martha Y Gondwe; Zhiwen Ding; Wanqi Liang; Dabing Zhang; Zoe A Wilson
Journal:  Plant Cell       Date:  2010-01-29       Impact factor: 11.277

3.  Atypical E2F activity coordinates PHR1 photolyase gene transcription with endoreduplication onset.

Authors:  Amandine Radziejwoski; Kobe Vlieghe; Tim Lammens; Barbara Berckmans; Sara Maes; Marcel A K Jansen; Claudia Knappe; Andreas Albert; Harald K Seidlitz; Günther Bahnweg; Dirk Inzé; Lieven De Veylder
Journal:  EMBO J       Date:  2010-12-03       Impact factor: 11.598

4.  CONSTANS and ASYMMETRIC LEAVES 1 complex is involved in the induction of FLOWERING LOCUS T in photoperiodic flowering in Arabidopsis.

Authors:  Young Hun Song; Ilha Lee; Sang Yeol Lee; Takato Imaizumi; Jong Chan Hong
Journal:  Plant J       Date:  2011-11-18       Impact factor: 6.417

5.  Cytokinin response factors regulate PIN-FORMED auxin transporters.

Authors:  Mária Šimášková; José Antonio O'Brien; Mamoona Khan; Giel Van Noorden; Krisztina Ötvös; Anne Vieten; Inge De Clercq; Johanna Maria Adriana Van Haperen; Candela Cuesta; Klára Hoyerová; Steffen Vanneste; Peter Marhavý; Krzysztof Wabnik; Frank Van Breusegem; Moritz Nowack; Angus Murphy; Jiří Friml; Dolf Weijers; Tom Beeckman; Eva Benková
Journal:  Nat Commun       Date:  2015-11-06       Impact factor: 14.919

6.  Telomere binding protein TRB1 is associated with promoters of translation machinery genes in vivo.

Authors:  Petra Procházková Schrumpfová; Ivona Vychodilová; Jan Hapala; Šárka Schořová; Vojtěch Dvořáček; Jiří Fajkus
Journal:  Plant Mol Biol       Date:  2015-11-23       Impact factor: 4.076

7.  APETALA2 negatively regulates multiple floral organ identity genes in Arabidopsis by recruiting the co-repressor TOPLESS and the histone deacetylase HDA19.

Authors:  Naden T Krogan; Kendra Hogan; Jeff A Long
Journal:  Development       Date:  2012-10-03       Impact factor: 6.868

8.  The membrane-bound NAC transcription factor ANAC013 functions in mitochondrial retrograde regulation of the oxidative stress response in Arabidopsis.

Authors:  Inge De Clercq; Vanessa Vermeirssen; Olivier Van Aken; Klaas Vandepoele; Monika W Murcha; Simon R Law; Annelies Inzé; Sophia Ng; Aneta Ivanova; Debbie Rombaut; Brigitte van de Cotte; Pinja Jaspers; Yves Van de Peer; Jaakko Kangasjärvi; James Whelan; Frank Van Breusegem
Journal:  Plant Cell       Date:  2013-09-17       Impact factor: 11.277

9.  The Chromatin-Remodeling Factor PICKLE Antagonizes Polycomb Repression of FT to Promote Flowering.

Authors:  Yanjun Jing; Qiang Guo; Rongcheng Lin
Journal:  Plant Physiol       Date:  2019-08-03       Impact factor: 8.340

10.  Dynamic landscapes of four histone modifications during deetiolation in Arabidopsis.

Authors:  Jean-Benoit F Charron; Hang He; Axel A Elling; Xing Wang Deng
Journal:  Plant Cell       Date:  2009-12-11       Impact factor: 11.277

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