Literature DB >> 15313245

Periplasmic binding proteins: a versatile superfamily for protein engineering.

Mary A Dwyer1, Homme W Hellinga.   

Abstract

The diversity of biological function, ligand binding, conformational changes and structural adaptability of the periplasmic binding protein superfamily have been exploited to engineer biosensors, allosteric control elements, biologically active receptors and enzymes using a combination of techniques, including computational design. Extensively redesigned periplasmic binding proteins have been re-introduced into bacteria to function in synthetic signal transduction pathways that respond to extracellular ligands and as biologically active enzymes.

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Year:  2004        PMID: 15313245     DOI: 10.1016/j.sbi.2004.07.004

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  97 in total

1.  Employing the metabolic "branch point effect" to generate an all-or-none, digital-like response in enzymatic outputs and enzyme-based sensors.

Authors:  Sandra Perez Rafael; Alexis Vallée-Bélisle; Esteve Fabregas; Kevin Plaxco; Giuseppe Palleschi; Francesco Ricci
Journal:  Anal Chem       Date:  2011-12-28       Impact factor: 6.986

2.  DNA targeting and cleavage by an engineered metalloprotein dimer.

Authors:  Siu Wah Wong-Deyrup; Charulata Prasannan; Cynthia M Dupureur; Sonya J Franklin
Journal:  J Biol Inorg Chem       Date:  2011-11-25       Impact factor: 3.358

3.  Evidence for an allosteric mechanism of substrate release from membrane-transporter accessory binding proteins.

Authors:  Fabrizio Marinelli; Sonja I Kuhlmann; Ernst Grell; Hans-Jörg Kunte; Christine Ziegler; José D Faraldo-Gómez
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-14       Impact factor: 11.205

4.  The structure of LsrB from Yersinia pestis complexed with autoinducer-2.

Authors:  Jeffrey S Kavanaugh; Lokesh Gakhar; Alexander R Horswill
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-11-29

Review 5.  Converting a protein into a switch for biosensing and functional regulation.

Authors:  Margaret M Stratton; Stewart N Loh
Journal:  Protein Sci       Date:  2011-01       Impact factor: 6.725

6.  Identification of cognate ligands for the Escherichia coli phnD protein product and engineering of a reagentless fluorescent biosensor for phosphonates.

Authors:  Shahir S Rizk; Matthew J Cuneo; Homme W Hellinga
Journal:  Protein Sci       Date:  2006-06-02       Impact factor: 6.725

7.  Local encoding of computationally designed enzyme activity.

Authors:  Malin Allert; Mary A Dwyer; Homme W Hellinga
Journal:  J Mol Biol       Date:  2006-12-05       Impact factor: 5.469

8.  Allosteric control of an ionotropic glutamate receptor with an optical switch.

Authors:  Matthew Volgraf; Pau Gorostiza; Rika Numano; Richard H Kramer; Ehud Y Isacoff; Dirk Trauner
Journal:  Nat Chem Biol       Date:  2005-12-11       Impact factor: 15.040

9.  Analysis of ligand binding to a ribose biosensor using site-directed mutagenesis and fluorescence spectroscopy.

Authors:  Natalie C Vercillo; Kaitlin J Herald; John M Fox; Bryan S Der; Jonathan D Dattelbaum
Journal:  Protein Sci       Date:  2007-01-22       Impact factor: 6.725

10.  Conformational flexibility of the leucine binding protein examined by protein domain coarse-grained molecular dynamics.

Authors:  Iwona Siuda; Lea Thøgersen
Journal:  J Mol Model       Date:  2013-09-19       Impact factor: 1.810

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