Literature DB >> 15312765

Dynamic coupling between the SH2 domain and active site of the COOH terminal Src kinase, Csk.

Lilly Wong1, Scot Lieser, Barbara Chie-Leon, Osamu Miyashita, Brandon Aubol, Jennifer Shaffer, Josè N Onuchic, Patricia A Jennings, Virgil L Woods, Joseph A Adams.   

Abstract

The SH2 domain is required for high catalytic activity in the COOH-terminal Src kinase (Csk). Previous solution studies suggest that a short peptide sequence, the SH2-kinase linker, provides a functional connection between the active site and the distal SH2 domain that could underlie this catalytic phenomenon. Substitutions in Phe183 (tyrosine, alanine, and glycine), a critical hydrophobic residue in the linker, result in large decreases in substrate turnover and large increases in the K(m) for ATP. Indeed, F183G possesses kinetic parameters that are similar to that for a truncated form of Csk lacking the SH2 domain, suggesting that a single mutation disrupts communication between this domain and the active site. Based on equilibrium and stopped-flow fluorescence experiments, the elevated K(m) values for the mutants are due to changes in the rates of phosphoryl transfer and not to reduced ATP-binding affinities. Based on hydrogen-deuterium exchange experiments, glycine substitution reduces flexibility in several polypeptide regions in Csk, tyrosine substitution increases flexibility, and alanine substitution leads to mixed effects compared to wild-type. Normal mode analysis indicates that Phe183 and its environment are under strain, a theoretical finding that supports the results of mutations. Overall, the data indicate that domain-domain interactions, controlled through the SH2-kinase linker, provide a dynamic balance within the Csk framework that is ideal for efficient phosphoryl transfer in the active site.

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Year:  2004        PMID: 15312765     DOI: 10.1016/j.jmb.2004.05.060

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  17 in total

1.  Exploring biomolecular machines: energy landscape control of biological reactions.

Authors:  José N Onuchic; Chigusa Kobayashi; Osamu Miyashita; Patricia Jennings; Kim K Baldridge
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

2.  Identification of N-terminal lobe motifs that determine the kinase activity of the catalytic domains and regulatory strategies of Src and Csk protein tyrosine kinases.

Authors:  Kezhen Huang; Yue-Hao Wang; Alex Brown; Gongqin Sun
Journal:  J Mol Biol       Date:  2009-03-06       Impact factor: 5.469

3.  Regulating SR protein phosphorylation through regions outside the kinase domain of SRPK1.

Authors:  Ryan M Plocinik; Sheng Li; Tong Liu; Kendra L Hailey; Jennifer Whitesides; Jennifer Whitehouse; Chen-Ting Ma; Xiang-Dong Fu; Gourisankar Gosh; Virgil L Woods; Patricia A Jennings; Joseph A Adams
Journal:  J Mol Biol       Date:  2011-05-13       Impact factor: 5.469

4.  Mechanism of intracellular cAMP sensor Epac2 activation: cAMP-induced conformational changes identified by amide hydrogen/deuterium exchange mass spectrometry (DXMS).

Authors:  Sheng Li; Tamara Tsalkova; Mark A White; Fang C Mei; Tong Liu; Daphne Wang; Virgil L Woods; Xiaodong Cheng
Journal:  J Biol Chem       Date:  2011-03-17       Impact factor: 5.157

Review 5.  Dynamic regulatory features of the protein tyrosine kinases.

Authors:  Neha Amatya; David Yin-Wei Lin; Amy H Andreotti
Journal:  Biochem Soc Trans       Date:  2019-08-08       Impact factor: 5.407

6.  PAS domain allostery and light-induced conformational changes in photoactive yellow protein upon I2 intermediate formation, probed with enhanced hydrogen/deuterium exchange mass spectrometry.

Authors:  Ronald Brudler; Chris R Gessner; Sheng Li; Sammy Tyndall; Elizabeth D Getzoff; Virgil L Woods
Journal:  J Mol Biol       Date:  2006-08-01       Impact factor: 5.469

7.  A novel disulfide bond in the SH2 Domain of the C-terminal Src kinase controls catalytic activity.

Authors:  Jamie E Mills; Paul C Whitford; Jennifer Shaffer; Jose N Onuchic; Joseph A Adams; Patricia A Jennings
Journal:  J Mol Biol       Date:  2006-10-26       Impact factor: 5.469

8.  CSK controls retinoic acid receptor (RAR) signaling: a RAR-c-SRC signaling axis is required for neuritogenic differentiation.

Authors:  Nandini Dey; Pradip K De; Mu Wang; Hongying Zhang; Erika A Dobrota; Kent A Robertson; Donald L Durden
Journal:  Mol Cell Biol       Date:  2007-02-26       Impact factor: 4.272

9.  Proteins at work: a combined small angle X-RAY scattering and theoretical determination of the multiple structures involved on the protein kinase functional landscape.

Authors:  Michael A Jamros; Leandro C Oliveira; Paul C Whitford; José N Onuchic; Joseph A Adams; Donald K Blumenthal; Patricia A Jennings
Journal:  J Biol Chem       Date:  2010-08-26       Impact factor: 5.157

10.  Conformational snapshots of Tec kinases during signaling.

Authors:  Raji E Joseph; Amy H Andreotti
Journal:  Immunol Rev       Date:  2009-03       Impact factor: 12.988

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