Literature DB >> 15308546

Microarray data mining with visual programming.

Tomaz Curk1, Janez Demsar, Qikai Xu, Gregor Leban, Uros Petrovic, Ivan Bratko, Gad Shaulsky, Blaz Zupan.   

Abstract

UNLABELLED: Visual programming offers an intuitive means of combining known analysis and visualization methods into powerful applications. The system presented here enables users who are not programmers to manage microarray and genomic data flow and to customize their analyses by combining common data analysis tools to fit their needs. AVAILABILITY: http://www.ailab.si/supp/bi-visprog SUPPLEMENTARY INFORMATION: http://www.ailab.si/supp/bi-visprog.

Mesh：

Year:  2004        PMID： 15308546     DOI： 10.1093/bioinformatics/bth474

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  33 in total

1.  Association and interactions between DNA repair gene polymorphisms and adult glioma.

Authors:  Yanhong Liu; Michael E Scheurer; Randa El-Zein; Yumei Cao; Kim-Anh Do; Mark Gilbert; Kenneth D Aldape; Qingyi Wei; Carol Etzel; Melissa L Bondy
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2009-01       Impact factor: 4.254

2.  BzpF is a CREB-like transcription factor that regulates spore maturation and stability in Dictyostelium.

Authors:  Eryong Huang; Shaheynoor Talukder; Timothy R Hughes; Tomaz Curk; Blaz Zupan; Gad Shaulsky; Mariko Katoh-Kurasawa
Journal:  Dev Biol       Date:  2011-07-23       Impact factor: 3.582

3.  Comprehensive lipidome analysis by shotgun lipidomics on a hybrid quadrupole-orbitrap-linear ion trap mass spectrometer.

Authors:  Reinaldo Almeida; Josch Konstantin Pauling; Elena Sokol; Hans Kristian Hannibal-Bach; Christer S Ejsing
Journal:  J Am Soc Mass Spectrom       Date:  2014-11-13       Impact factor: 3.109

4.  Development and comparative assessment of Raman spectroscopic classification algorithms for lesion discrimination in stereotactic breast biopsies with microcalcifications.

Authors:  Narahara Chari Dingari; Ishan Barman; Anushree Saha; Sasha McGee; Luis H Galindo; Wendy Liu; Donna Plecha; Nina Klein; Ramachandra Rao Dasari; Maryann Fitzmaurice
Journal:  J Biophotonics       Date:  2012-07-20       Impact factor: 3.207

5.  The balance in the delivery of ER components and the vacuolar proton pump to the phagosome depends on myosin IK in Dictyostelium.

Authors:  Régis Dieckmann; Aurélie Guého; Roger Monroy; Thomas Ruppert; Gareth Bloomfield; Thierry Soldati
Journal:  Mol Cell Proteomics       Date:  2012-06-26       Impact factor: 5.911

6.  HSF1-mediated BAG3 expression attenuates apoptosis in 4-hydroxynonenal-treated colon cancer cells via stabilization of anti-apoptotic Bcl-2 proteins.

Authors:  Aaron T Jacobs; Lawrence J Marnett
Journal:  J Biol Chem       Date:  2009-01-29       Impact factor: 5.157

7.  Generalized query-based active learning to identify differentially methylated regions in DNA.

Authors:  Md Muksitul Haque; Lawrence B Holder; Michael K Skinner; Diane J Cook
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2013 May-Jun       Impact factor: 3.710

8.  Transcriptional profiling of Dictyostelium with RNA sequencing.

Authors:  Edward Roshan Miranda; Gregor Rot; Marko Toplak; Balaji Santhanam; Tomaz Curk; Gad Shaulsky; Blaz Zupan
Journal:  Methods Mol Biol       Date:  2013

9.  ABC transporters in Dictyostelium discoideum development.

Authors:  Edward Roshan Miranda; Olga Zhuchenko; Marko Toplak; Balaji Santhanam; Blaz Zupan; Adam Kuspa; Gad Shaulsky
Journal:  PLoS One       Date:  2013-08-14       Impact factor: 3.240

10.  dictyExpress: a Dictyostelium discoideum gene expression database with an explorative data analysis web-based interface.

Authors:  Gregor Rot; Anup Parikh; Tomaz Curk; Adam Kuspa; Gad Shaulsky; Blaz Zupan
Journal:  BMC Bioinformatics       Date:  2009-08-25       Impact factor: 3.169
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