Literature DB >> 15306382

Probing the role of water in protein conformation and function.

R P Rand1.   

Abstract

Life began in a bath of water and has never escaped it. Cellular function has forced the evolution of many mechanisms ensuring that cellular water concentration has never changed significantly. To free oneself of any conceptual distinction among all small molecules, solutes and solvents, means that experiments to probe water's specific role in molecular function can be designed like any classical chemical reaction. Such an 'osmotic stress' strategy will be described in general and for an enzyme, hexokinase. Water behaves like a reactant that competes with glucose in binding to hexokinase, and modulates its conformational change and activity. This 'osmotic stress' strategy, now applied to many very different systems, shows that water plays a significant role, energetically, in most macromolecular reactions. It can be required to fill obligatory space, it dominates nearest non-specific interactions between large surfaces, it can be a reactant modulating conformational change; all this in addition to its more commonly perceived static role as an integral part of stereospecific intramolecular structure.

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Year:  2004        PMID: 15306382      PMCID: PMC1693414          DOI: 10.1098/rstb.2004.1504

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  37 in total

Review 1.  Osmosensing by bacteria: signals and membrane-based sensors.

Authors:  J M Wood
Journal:  Microbiol Mol Biol Rev       Date:  1999-03       Impact factor: 11.056

2.  Probing protein hydration and conformational states in solution.

Authors:  C Reid; R P Rand
Journal:  Biophys J       Date:  1997-03       Impact factor: 4.033

3.  Measuring hydration changes of proteins in solution: applications of osmotic stress and structure-based calculations.

Authors:  V J LiCata; N M Allewell
Journal:  Methods Enzymol       Date:  1998       Impact factor: 1.600

4.  In disperse solution, "osmotic stress" is a restricted case of preferential interactions.

Authors:  S N Timasheff
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-23       Impact factor: 11.205

5.  A nontraditional role for water in the cytochrome c oxidase reaction.

Authors:  J A Kornblatt; G H Hoa
Journal:  Biochemistry       Date:  1990-10-09       Impact factor: 3.162

6.  Requirements for osmosensing and osmotic activation of transporter ProP from Escherichia coli.

Authors:  K I Racher; D E Culham; J M Wood
Journal:  Biochemistry       Date:  2001-06-19       Impact factor: 3.162

7.  Measurement of the repulsive force between polyelectrolyte molecules in ionic solution: hydration forces between parallel DNA double helices.

Authors:  D C Rau; B Lee; V A Parsegian
Journal:  Proc Natl Acad Sci U S A       Date:  1984-05       Impact factor: 11.205

8.  Molecular recognition mediated by bound water. A mechanism for star activity of the restriction endonuclease EcoRI.

Authors:  C R Robinson; S G Sligar
Journal:  J Mol Biol       Date:  1993-11-20       Impact factor: 5.469

9.  Probing alamethicin channels with water-soluble polymers. Effect on conductance of channel states.

Authors:  S M Bezrukov; I Vodyanoy
Journal:  Biophys J       Date:  1993-01       Impact factor: 4.033

10.  Variation in hydration forces between neutral phospholipid bilayers: evidence for hydration attraction.

Authors:  R P Rand; N Fuller; V A Parsegian; D C Rau
Journal:  Biochemistry       Date:  1988-10-04       Impact factor: 3.162

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  13 in total

Review 1.  What can we learn by studying enzymes in non-aqueous media?

Authors:  Peter J Halling
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-08-29       Impact factor: 6.237

2.  Pulsatile Lipid Vesicles under Osmotic Stress.

Authors:  Morgan Chabanon; James C S Ho; Bo Liedberg; Atul N Parikh; Padmini Rangamani
Journal:  Biophys J       Date:  2017-04-25       Impact factor: 4.033

3.  Effect of osmolytes on the binding of EGR1 transcription factor to DNA.

Authors:  David C Mikles; Vikas Bhat; Brett J Schuchardt; Caleb B McDonald; Amjad Farooq
Journal:  Biopolymers       Date:  2015-02       Impact factor: 2.505

4.  The influence of type 2 diabetes on fibrin structure and function.

Authors:  E J Dunn; R A S Ariëns; P J Grant
Journal:  Diabetologia       Date:  2005-04-29       Impact factor: 10.122

5.  Cytochrome P450 from Photobacterium profundum SS9, a piezophilic bacterium, exhibits a tightened control of water access to the active site.

Authors:  Elena V Sineva; Dmitri R Davydov
Journal:  Biochemistry       Date:  2010-11-23       Impact factor: 3.162

6.  K(+) channels of squid giant axons open by an osmotic stress in hypertonic solutions containing nonelectrolytes.

Authors:  Fumio Kukita
Journal:  J Membr Biol       Date:  2011-07-21       Impact factor: 1.843

7.  Probing membrane protein structure using water polarization transfer solid-state NMR.

Authors:  Jonathan K Williams; Mei Hong
Journal:  J Magn Reson       Date:  2014-08-25       Impact factor: 2.229

8.  Cell volume control in three dimensions: Water movement without solute movement.

Authors:  Frederick Sachs; Mettupalayam V Sivaselvan
Journal:  J Gen Physiol       Date:  2015-04-13       Impact factor: 4.086

9.  Stabilization of zwitterionic versus canonical proline by water molecules.

Authors:  Gang Yang; Lijun Zhou; Yang Chen
Journal:  Springerplus       Date:  2016-01-06

10.  A NAD(P) reductase like protein is the salicylic acid receptor in the appendix of the Sauromatum guttatum inflorescence.

Authors:  Hanna Skubatz; Mónica V Orellana; William N Howald
Journal:  Intrinsically Disord Proteins       Date:  2013-09-19
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