Literature DB >> 15306346

Protein networks, pleiotropy and the evolution of senescence.

Daniel E L Promislow1.   

Abstract

The number of interactions, or connectivity, among proteins in the yeast protein interaction network follows a power law. I compare patterns of connectivity for subsets of yeast proteins associated with senescence and with five other traits. I find that proteins associated with ageing have significantly higher connectivity than expected by chance, a pattern not seen for most other datasets. The pattern holds even when controlling for other factors also associated with connectivity, such as localization of protein expression within the cell. I suggest that these observations are consistent with the antagonistic pleiotropy theory for the evolution of senescence. In further support of this argument, I find that a protein's connectivity is positively correlated with the number of traits it influences or its degree of pleiotropy, and further show that the average degree of pleiotropy is greatest for proteins associated with senescence. I explain these results with a simple mathematical model combining assumptions of the antagonistic pleiotropy theory for the evolution of senescence with data on network topology. These findings integrate molecular and evolutionary models of senescence, and should aid in the search for new ageing genes.

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Year:  2004        PMID: 15306346      PMCID: PMC1691725          DOI: 10.1098/rspb.2004.2732

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN: 0962-8452            Impact factor:   5.349


  36 in total

1.  A large-scale overexpression screen in Saccharomyces cerevisiae identifies previously uncharacterized cell cycle genes.

Authors:  L F Stevenson; B K Kennedy; E Harlow
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-27       Impact factor: 11.205

2.  AGEID: a database of aging genes and interventions.

Authors:  Matt Kaeberlein; Beatrice Jegalian; Mitch McVey
Journal:  Mech Ageing Dev       Date:  2002-04-30       Impact factor: 5.432

3.  Metabolic network structure determines key aspects of functionality and regulation.

Authors:  Jörg Stelling; Steffen Klamt; Katja Bettenbrock; Stefan Schuster; Ernst Dieter Gilles
Journal:  Nature       Date:  2002-11-14       Impact factor: 49.962

4.  Global analysis of protein localization in budding yeast.

Authors:  Won-Ki Huh; James V Falvo; Luke C Gerke; Adam S Carroll; Russell W Howson; Jonathan S Weissman; Erin K O'Shea
Journal:  Nature       Date:  2003-10-16       Impact factor: 49.962

5.  TopNet: a tool for comparing biological sub-networks, correlating protein properties with topological statistics.

Authors:  Haiyuan Yu; Xiaowei Zhu; Dov Greenbaum; John Karro; Mark Gerstein
Journal:  Nucleic Acids Res       Date:  2004-01-14       Impact factor: 16.971

6.  The fractionation experiment: reducing heterogeneity to investigate age-specific mortality in Drosophila.

Authors:  A A Khazaeli; S D Pletcher; J W Curtsinger
Journal:  Mech Ageing Dev       Date:  1998-11-16       Impact factor: 5.432

Review 7.  Evolutionary medicine: from dwarf model systems to healthy centenarians?

Authors:  Valter D Longo; Caleb E Finch
Journal:  Science       Date:  2003-02-28       Impact factor: 47.728

8.  The complex genetic architecture of Drosophila life span.

Authors:  Jeff Leips; Trudy F C Mackay
Journal:  Exp Aging Res       Date:  2002 Oct-Dec       Impact factor: 1.645

9.  Predicting protein function from protein/protein interaction data: a probabilistic approach.

Authors:  Stanley Letovsky; Simon Kasif
Journal:  Bioinformatics       Date:  2003       Impact factor: 6.937

10.  Thermotolerance and extended life-span conferred by single-gene mutations and induced by thermal stress.

Authors:  G J Lithgow; T M White; S Melov; T E Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  1995-08-01       Impact factor: 11.205

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  43 in total

Review 1.  A network perspective on metabolism and aging.

Authors:  Quinlyn A Soltow; Dean P Jones; Daniel E L Promislow
Journal:  Integr Comp Biol       Date:  2010-07-12       Impact factor: 3.326

2.  Synergistic Pleiotropy Overrides the Costs of Complexity in Viral Adaptation.

Authors:  Lindsey W McGee; Andrew M Sackman; Anneliese J Morrison; Jessica Pierce; Jeremy Anisman; Darin R Rokyta
Journal:  Genetics       Date:  2015-11-12       Impact factor: 4.562

Review 3.  Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review.

Authors:  Peter Csermely; Tamás Korcsmáros; Huba J M Kiss; Gábor London; Ruth Nussinov
Journal:  Pharmacol Ther       Date:  2013-02-04       Impact factor: 12.310

4.  Genetic pleiotropy in Saccharomyces cerevisiae quantified by high-resolution phenotypic profiling.

Authors:  Elke Ericson; Ilona Pylvänäinen; Luciano Fernandez-Ricaud; Olle Nerman; Jonas Warringer; Anders Blomberg
Journal:  Mol Genet Genomics       Date:  2006-03-14       Impact factor: 3.291

5.  Inferring the functions of longevity genes with modular subnetwork biomarkers of Caenorhabditis elegans aging.

Authors:  Kristen Fortney; Max Kotlyar; Igor Jurisica
Journal:  Genome Biol       Date:  2010-02-03       Impact factor: 13.583

6.  Analyses of human-chimpanzee orthologous gene pairs to explore evolutionary hypotheses of aging.

Authors:  João Pedro de Magalhães; George M Church
Journal:  Mech Ageing Dev       Date:  2007-03-25       Impact factor: 5.432

7.  Network strategies to understand the aging process and help age-related drug design.

Authors:  Gábor I Simkó; Dávid Gyurkó; Dániel V Veres; Tibor Nánási; Peter Csermely
Journal:  Genome Med       Date:  2009-09-28       Impact factor: 11.117

8.  The Drosophila foraging gene mediates adult plasticity and gene-environment interactions in behaviour, metabolites, and gene expression in response to food deprivation.

Authors:  Clement F Kent; Tim Daskalchuk; Lisa Cook; Marla B Sokolowski; Ralph J Greenspan
Journal:  PLoS Genet       Date:  2009-08-21       Impact factor: 5.917

9.  Age-related transcriptional changes in gene expression in different organs of mice support the metabolic stability theory of aging.

Authors:  Thore C Brink; Lloyd Demetrius; Hans Lehrach; James Adjaye
Journal:  Biogerontology       Date:  2008-11-23       Impact factor: 4.277

10.  A human protein interaction network shows conservation of aging processes between human and invertebrate species.

Authors:  Russell Bell; Alan Hubbard; Rakesh Chettier; Di Chen; John P Miller; Pankaj Kapahi; Mark Tarnopolsky; Sudhir Sahasrabuhde; Simon Melov; Robert E Hughes
Journal:  PLoS Genet       Date:  2009-03-13       Impact factor: 5.917

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