Literature DB >> 15303828

Toward an integrated model of protein-DNA recognition as inferred from NMR studies on the Lac repressor system.

Charalampos G Kalodimos1, Rolf Boelens, Robert Kaptein.   

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Year:  2004        PMID: 15303828     DOI: 10.1021/cr0304065

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


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  30 in total

1.  Dynamics and recognition within a protein-DNA complex: a molecular dynamics study of the SKN-1/DNA interaction.

Authors:  Loïc Etheve; Juliette Martin; Richard Lavery
Journal:  Nucleic Acids Res       Date:  2015-12-31       Impact factor: 16.971

2.  Balancing between affinity and speed in target DNA search by zinc-finger proteins via modulation of dynamic conformational ensemble.

Authors:  Levani Zandarashvili; Alexandre Esadze; Dana Vuzman; Catherine A Kemme; Yaakov Levy; Junji Iwahara
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-31       Impact factor: 11.205

Review 3.  Origins of specificity in protein-DNA recognition.

Authors:  Remo Rohs; Xiangshu Jin; Sean M West; Rohit Joshi; Barry Honig; Richard S Mann
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

4.  Extrinsic interactions dominate helical propensity in coupled binding and folding of the lactose repressor protein hinge helix.

Authors:  Hongli Zhan; Liskin Swint-Kruse; Kathleen Shive Matthews
Journal:  Biochemistry       Date:  2006-05-09       Impact factor: 3.162

5.  Sequence-dependent sliding kinetics of p53.

Authors:  Jason S Leith; Anahita Tafvizi; Fang Huang; William E Uspal; Patrick S Doyle; Alan R Fersht; Leonid A Mirny; Antoine M van Oijen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-25       Impact factor: 11.205

6.  Critical biophysical properties in the Pseudomonas aeruginosa efflux gene regulator MexR are targeted by mutations conferring multidrug resistance.

Authors:  Cecilia Andrésen; Shah Jalal; Daniel Aili; Yi Wang; Sohidul Islam; Anngelica Jarl; Bo Liedberg; Bengt Wretlind; Lars-Göran Mårtensson; Maria Sunnerhagen
Journal:  Protein Sci       Date:  2010-04       Impact factor: 6.725

7.  Synergy of aromatic residues and phosphoserines within the intrinsically disordered DNA-binding inhibitory elements of the Ets-1 transcription factor.

Authors:  Geneviève Desjardins; Charles A Meeker; Niraja Bhachech; Simon L Currie; Mark Okon; Barbara J Graves; Lawrence P McIntosh
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-14       Impact factor: 11.205

8.  Comparing native and irradiated E. coli lactose repressor-operator complex by molecular dynamics simulation.

Authors:  Samia Aci-Sèche; Norbert Garnier; Stéphane Goffinont; Daniel Genest; Mélanie Spotheim-Maurizot; Monique Genest
Journal:  Eur Biophys J       Date:  2010-03-28       Impact factor: 1.733

9.  Operator sequence alters gene expression independently of transcription factor occupancy in bacteria.

Authors:  Hernan G Garcia; Alvaro Sanchez; James Q Boedicker; Melisa Osborne; Jeff Gelles; Jane Kondev; Rob Phillips
Journal:  Cell Rep       Date:  2012-07-12       Impact factor: 9.423

10.  Structural determinants of specific DNA-recognition by the THAP zinc finger.

Authors:  Sébastien Campagne; Olivier Saurel; Virginie Gervais; Alain Milon
Journal:  Nucleic Acids Res       Date:  2010-02-09       Impact factor: 16.971

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