Literature DB >> 15302932

Translation arrest of SecM is essential for the basal and regulated expression of SecA.

Akiko Murakami1, Hitoshi Nakatogawa, Koreaki Ito.   

Abstract

The SecM protein of Escherichia coli contains an arrest sequence (F(150)XXXXWIXXXXGIRAGP(166)), which interacts with the ribosomal exit tunnel to halt translation elongation beyond Pro-166. This inhibition is reversed by active export of the nascent SecM chain. Here, we studied the physiological roles of SecM. Arrest-alleviating mutations in the arrest sequence reduced the expression of secA, a downstream gene on the same mRNA. Among such mutations, the arrest-abolishing P166A substitution mutation on the chromosomal secM gene proved lethal unless the mutant cells are complemented with excess SecA. Whereas secretion defect due either to azide addition, a secY mutation, or low temperature leads to up-regulated SecA biosynthesis, this regulation was lost by a secM mutation, which synergistically retarded growth of cells with lowered secretion activity. Finally, an arrest-alleviating rRNA mutation affecting the constricted part of the exit tunnel lowered the basal level of SecA as well as its secretion defect-induced up-regulation. Thus, the arrest sequence of SecM has at least two roles in SecA translation. First, the transient elongation arrest in normal cells is required for the synthesis of SecA at levels sufficient to support cell growth. Second, the prolonged SecM elongation arrest under conditions of unfavorable protein secretion is required for the enhanced expression of SecA to cope with such conditions.

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Year:  2004        PMID: 15302932      PMCID: PMC514405          DOI: 10.1073/pnas.0404907101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

Review 1.  Intraribosomal regulation of expression and fate of proteins.

Authors:  Hitoshi Nakatogawa; Koreaki Ito
Journal:  Chembiochem       Date:  2004-01-03       Impact factor: 3.164

2.  X-ray structure of a protein-conducting channel.

Authors:  Bert Van den Berg; William M Clemons; Ian Collinson; Yorgo Modis; Enno Hartmann; Stephen C Harrison; Tom A Rapoport
Journal:  Nature       Date:  2003-12-03       Impact factor: 49.962

3.  Dissociation of the dimeric SecA ATPase during protein translocation across the bacterial membrane.

Authors:  Eran Or; Amiel Navon; Tom Rapoport
Journal:  EMBO J       Date:  2002-09-02       Impact factor: 11.598

Review 4.  The chemistry of protein synthesis and voyage through the ribosomal tunnel.

Authors:  Simon Jenni; Nenad Ban
Journal:  Curr Opin Struct Biol       Date:  2003-04       Impact factor: 6.809

5.  Biochemical characterization of a mutationally altered protein translocase: proton motive force stimulation of the initiation phase of translocation.

Authors:  Hiroyuki Mori; Koreaki Ito
Journal:  J Bacteriol       Date:  2003-01       Impact factor: 3.490

6.  Cleavage of the A site mRNA codon during ribosome pausing provides a mechanism for translational quality control.

Authors:  Christopher S Hayes; Robert T Sauer
Journal:  Mol Cell       Date:  2003-10       Impact factor: 17.970

7.  Translocon "pulling" of nascent SecM controls the duration of its translational pause and secretion-responsive secA regulation.

Authors:  Martha E Butkus; Lucia B Prundeanu; Donald B Oliver
Journal:  J Bacteriol       Date:  2003-11       Impact factor: 3.490

8.  An Escherichia coli strain with all chromosomal rRNA operons inactivated: complete exchange of rRNA genes between bacteria.

Authors:  T Asai; D Zaporojets; C Squires; C L Squires
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-02       Impact factor: 11.205

9.  Nascent-peptide-mediated ribosome stalling at a stop codon induces mRNA cleavage resulting in nonstop mRNA that is recognized by tmRNA.

Authors:  Takafumi Sunohara; Kaoru Jojima; Yasufumi Yamamoto; Toshifumi Inada; Hiroji Aiba
Journal:  RNA       Date:  2004-03       Impact factor: 4.942

10.  Nucleotide and phospholipid-dependent control of PPXD and C-domain association for SecA ATPase.

Authors:  Haiyuan Ding; Ishita Mukerji; Donald Oliver
Journal:  Biochemistry       Date:  2003-11-25       Impact factor: 3.162

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  26 in total

1.  The translational regulatory function of SecM requires the precise timing of membrane targeting.

Authors:  Mee-Ngan Yap; Harris D Bernstein
Journal:  Mol Microbiol       Date:  2011-06-03       Impact factor: 3.501

Review 2.  Divergent stalling sequences sense and control cellular physiology.

Authors:  Koreaki Ito; Shinobu Chiba; Kit Pogliano
Journal:  Biochem Biophys Res Commun       Date:  2010-02-01       Impact factor: 3.575

3.  Identification and characterization of a translation arrest motif in VemP by systematic mutational analysis.

Authors:  Hiroyuki Mori; Sohei Sakashita; Jun Ito; Eiji Ishii; Yoshinori Akiyama
Journal:  J Biol Chem       Date:  2018-01-09       Impact factor: 5.157

4.  SecM facilitates translocase function of SecA by localizing its biosynthesis.

Authors:  Hitoshi Nakatogawa; Akiko Murakami; Hiroyuki Mori; Koreaki Ito
Journal:  Genes Dev       Date:  2005-02-15       Impact factor: 11.361

5.  Prolyl-tRNA(Pro) in the A-site of SecM-arrested ribosomes inhibits the recruitment of transfer-messenger RNA.

Authors:  Fernando Garza-Sánchez; Brian D Janssen; Christopher S Hayes
Journal:  J Biol Chem       Date:  2006-09-12       Impact factor: 5.157

6.  Functional defects in transfer RNAs lead to the accumulation of ribosomal RNA precursors.

Authors:  Jacoba G Slagter-Jäger; Leopold Puzis; Nancy S Gutgsell; Marlene Belfort; Chaitanya Jain
Journal:  RNA       Date:  2007-02-09       Impact factor: 4.942

7.  Increased expression of the bacterial glycolipid MPIase is required for efficient protein translocation across membranes in cold conditions.

Authors:  Katsuhiro Sawasato; Sonomi Suzuki; Ken-Ichi Nishiyama
Journal:  J Biol Chem       Date:  2019-04-01       Impact factor: 5.157

8.  Transient ribosomal attenuation coordinates protein synthesis and co-translational folding.

Authors:  Gong Zhang; Magdalena Hubalewska; Zoya Ignatova
Journal:  Nat Struct Mol Biol       Date:  2009-02-08       Impact factor: 15.369

9.  Recruitment of a species-specific translational arrest module to monitor different cellular processes.

Authors:  Shinobu Chiba; Takashi Kanamori; Takuya Ueda; Yoshinori Akiyama; Kit Pogliano; Koreaki Ito
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-07       Impact factor: 11.205

Review 10.  Mechanisms of ribosome rescue in bacteria.

Authors:  Kenneth C Keiler
Journal:  Nat Rev Microbiol       Date:  2015-04-13       Impact factor: 60.633

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