Literature DB >> 15300404

The mitochondrial DNA of land plants: peculiarities in phylogenetic perspective.

Volker Knoop1.   

Abstract

Land plants exhibit a significant evolutionary plasticity in their mitochondrial DNA (mtDNA), which contrasts with the more conservative evolution of their chloroplast genomes. Frequent genomic rearrangements, the incorporation of foreign DNA from the nuclear and chloroplast genomes, an ongoing transfer of genes to the nucleus in recent evolutionary times and the disruption of gene continuity in introns or exons are the hallmarks of plant mtDNA, at least in flowering plants. Peculiarities of gene expression, most notably RNA editing and trans-splicing, are significantly more pronounced in land plant mitochondria than in chloroplasts. At the same time, mtDNA is generally the most slowly evolving of the three plant cell genomes on the sequence level, with unique exceptions in only some plant lineages. The slow sequence evolution and a variable occurrence of introns in plant mtDNA provide an attractive reservoir of phylogenetic information to trace the phylogeny of older land plant clades, which is as yet not fully resolved. This review attempts to summarize the unique aspects of land plant mitochondrial evolution from a phylogenetic perspective. Copyright 2004 Springer-Verlag

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Year:  2004        PMID: 15300404     DOI: 10.1007/s00294-004-0522-8

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  154 in total

1.  A mitochondrial intron sequence in the 5'-flanking region of a plant nuclear lectin gene.

Authors:  V Knoop; A Brennicke
Journal:  Curr Genet       Date:  1991-11       Impact factor: 3.886

2.  Molecular phylogeny of extant gymnosperms and seed plant evolution: analysis of nuclear 18S rRNA sequences.

Authors:  S M Chaw; A Zharkikh; H M Sung; T C Lau; W H Li
Journal:  Mol Biol Evol       Date:  1997-01       Impact factor: 16.240

3.  RNA editing in plant mitochondria.

Authors:  P S Covello; M W Gray
Journal:  Nature       Date:  1989-10-19       Impact factor: 49.962

4.  The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris L.) reveals a novel gene for tRNA(Cys)(GCA).

Authors:  T Kubo; S Nishizawa; A Sugawara; N Itchoda; A Estiati; T Mikami
Journal:  Nucleic Acids Res       Date:  2000-07-01       Impact factor: 16.971

5.  Plant mitochondrial RNA editing.

Authors:  S Steinhauser; S Beckert; I Capesius; O Malek; V Knoop
Journal:  J Mol Evol       Date:  1999-03       Impact factor: 2.395

6.  The evolutionary split of Pinaceae from other conifers: evidence from an intron loss and a multigene phylogeny.

Authors:  F Gugerli; C Sperisen; U Büchler; I Brunner; S Brodbeck; J D Palmer; Y L Qiu
Journal:  Mol Phylogenet Evol       Date:  2001-11       Impact factor: 4.286

7.  Mitochondrial and chloroplast DNA-based phylogeny of Pelargonium (Geraniaceae).

Authors:  F T Bakker; A Culham; C E Pankhurst; M Gibby
Journal:  Am J Bot       Date:  2000-05       Impact factor: 3.844

8.  Phylogeny of seed plants based on all three genomic compartments: extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers.

Authors:  L M Bowe; G Coat; C W dePamphilis
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

9.  Mitochondrial RNA editing of cytochrome c oxidase subunit II (coxII) in the primitive vascular plant Psilotum nudum.

Authors:  G L Sper-Whitis; A L Russell; J C Vaughn
Journal:  Biochim Biophys Acta       Date:  1994-06-21

10.  Divergent intron conservation in the mitochondrial nad2 gene: signatures for the three bryophyte classes (mosses, liverworts, and hornworts) and the lycophytes.

Authors:  Dagmar Pruchner; Susanne Beckert; Hermann Muhle; Volker Knoop
Journal:  J Mol Evol       Date:  2002-09       Impact factor: 2.395

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  99 in total

1.  Genes and processed paralogs co-exist in plant mitochondria.

Authors:  Argelia Cuenca; Gitte Petersen; Ole Seberg; Anne Hoppe Jahren
Journal:  J Mol Evol       Date:  2012-04-07       Impact factor: 2.395

Review 2.  Function of chloroplast RNA-binding proteins.

Authors:  Jessica Jacobs; Ulrich Kück
Journal:  Cell Mol Life Sci       Date:  2010-09-17       Impact factor: 9.261

3.  Crystal structures of DNA-Whirly complexes and their role in Arabidopsis organelle genome repair.

Authors:  Laurent Cappadocia; Alexandre Maréchal; Jean-Sébastien Parent; Etienne Lepage; Jurgen Sygusch; Normand Brisson
Journal:  Plant Cell       Date:  2010-06-15       Impact factor: 11.277

4.  Increased accumulation of intron-containing transcripts in rice mitochondria caused by low temperature: is cold-sensitive RNA editing implicated?

Authors:  Shiho Kurihara-Yonemoto; Tomohiko Kubo
Journal:  Curr Genet       Date:  2010-09-28       Impact factor: 3.886

Review 5.  Minireview: DNA replication in plant mitochondria.

Authors:  John D Cupp; Brent L Nielsen
Journal:  Mitochondrion       Date:  2014-03-26       Impact factor: 4.160

6.  Constancy of organellar genome copy numbers during leaf development and senescence in higher plants.

Authors:  Weimin Li; Stephanie Ruf; Ralph Bock
Journal:  Mol Genet Genomics       Date:  2005-11-25       Impact factor: 3.291

7.  Evolutionary origin of a plant mitochondrial group II intron from a reverse transcriptase/maturase-encoding ancestor.

Authors:  Daniela Ahlert; Katrin Piepenburg; Jörg Kudla; Ralph Bock
Journal:  J Plant Res       Date:  2006-06-09       Impact factor: 2.629

8.  The Owen mitochondrial genome in sugar beet (Beta vulgaris L.): possible mechanisms of extensive rearrangements and the origin of the mitotype-unique regions.

Authors:  Mizuho Satoh; Tomohiko Kubo; Tetsuo Mikami
Journal:  Theor Appl Genet       Date:  2006-05-31       Impact factor: 5.699

9.  Origins and evolution of the recA/RAD51 gene family: evidence for ancient gene duplication and endosymbiotic gene transfer.

Authors:  Zhenguo Lin; Hongzhi Kong; Masatoshi Nei; Hong Ma
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-23       Impact factor: 11.205

10.  Complete mitochondrial genome sequence and identification of a candidate gene responsible for cytoplasmic male sterility in radish (Raphanus sativus L.) containing DCGMS cytoplasm.

Authors:  Jee Young Park; Young-Pyo Lee; Jonghoon Lee; Beom-Soon Choi; Sunggil Kim; Tae-Jin Yang
Journal:  Theor Appl Genet       Date:  2013-03-29       Impact factor: 5.699

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