Literature DB >> 15299759

On the ab initio solution of the phase problem for macromolecules at very low resolution: the few atoms model method.

V Y Lunin1, N L Lunina, T E Petrova, E A Vernoslova, A G Urzhumtsev, A D Podjarny.   

Abstract

A method is proposed for the solution of the phase problem at very low resolution for macromolecules. It generates randomly a very large number of models, each consisting of a few (two to ten) pseudo-atoms. The corresponding amplitudes are used for selecting a subset of 'best' models by choosing those with the highest correlation with experimental values. The phases calculated from these 'best' models are analysed by a clusterization procedure leading to a few possible solutions, from which the correct one can be recognized by simple additional criteria. This method has been successfully applied to the neutron diffraction data of the AspRS-tRNA(Asp) complex at 50 A resolution and to data calculated from a model ribosome crystal at 60 A resolution.

Year:  1995        PMID: 15299759     DOI: 10.1107/S0907444995005075

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  6 in total

1.  On the direct determination of three-dimensional crystallographic phases at low resolution: crambin at 6 A.

Authors:  D L Dorset
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

2.  Combining solution wide-angle X-ray scattering and crystallography: determination of molecular envelope and heavy-atom sites.

Authors:  Xinguo Hong; Quan Hao
Journal:  J Appl Crystallogr       Date:  2009-02-07       Impact factor: 3.304

3.  Direct phase determination in protein electron crystallography: the pseudo-atom approximation.

Authors:  D L Dorset
Journal:  Proc Natl Acad Sci U S A       Date:  1997-03-04       Impact factor: 11.205

Review 4.  Putting structure into context: fitting of atomic models into electron microscopic and electron tomographic reconstructions.

Authors:  Niels Volkmann
Journal:  Curr Opin Cell Biol       Date:  2011-12-05       Impact factor: 8.382

5.  Cluster analysis for phasing with molecular replacement: a feasibility study.

Authors:  Andreas Buehler; Ludmila Urzhumtseva; Vladimir Y Lunin; Alexandre Urzhumtsev
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-06-20

6.  Progress in low-resolution ab initio phasing with CrowdPhase.

Authors:  Julien Jorda; Michael R Sawaya; Todd O Yeates
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-03-01       Impact factor: 7.652

  6 in total

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