Literature DB >> 15299701

X-ray diffraction analysis of crystals containing twofold symmetric nucleosome core particles.

J M Harp1, E C Uberbacher, A E Roberson, E L Palmer, A Gewiess, G J Bunick.   

Abstract

Nucleosome core particles containing a DNA palindrome and purified chicken erythrocyte histone octamer have been reconstituted and crystallized. The dyad symmetry of the palindrome extends the dyad symmetry of the histone octamer to result in a twofold symmetric particle. This ensures that the structure determined by X-ray diffraction will yield a true representation of the DNA strand rather than the twofold averaged structure which would result from using a non-palindromic DNA sequence. The crystals provide isotropic diffraction to 3.2 A with observed reflections extending to d spacings of about 2.8 A using a rotating-anode Cu Kalpha X-ray source. Although the DNA palindrome is a factor contributing to the quality of the diffraction data, another significant factor is an improved preparative technique which enriches for correctly phased nucleosome core particles.

Entities:  

Year:  1996        PMID: 15299701     DOI: 10.1107/S0907444995009139

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  8 in total

Review 1.  Structure, dynamics, and evolution of centromeric nucleosomes.

Authors:  Yamini Dalal; Takehito Furuyama; Danielle Vermaak; Steven Henikoff
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-24       Impact factor: 11.205

2.  DNA sequence-directed organization of chromatin: structure-based computational analysis of nucleosome-binding sequences.

Authors:  Sreekala Balasubramanian; Fei Xu; Wilma K Olson
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

3.  Single-Molecule Observation Reveals Spontaneous Protein Dynamics in the Nucleosome.

Authors:  Jongseong Kim; Sijie Wei; Jaehyoun Lee; Hongjun Yue; Tae-Hee Lee
Journal:  J Phys Chem B       Date:  2016-08-16       Impact factor: 2.991

4.  Chromosomes. CENP-C reshapes and stabilizes CENP-A nucleosomes at the centromere.

Authors:  Samantha J Falk; Lucie Y Guo; Nikolina Sekulic; Evan M Smoak; Tomoyasu Mani; Glennis A Logsdon; Kushol Gupta; Lars E T Jansen; Gregory D Van Duyne; Sergei A Vinogradov; Michael A Lampson; Ben E Black
Journal:  Science       Date:  2015-05-08       Impact factor: 47.728

5.  A novel hybrid single molecule approach reveals spontaneous DNA motion in the nucleosome.

Authors:  Sijie Wei; Samantha J Falk; Ben E Black; Tae-Hee Lee
Journal:  Nucleic Acids Res       Date:  2015-05-26       Impact factor: 16.971

Review 6.  Structures of Native-like Nucleosomes: One Step Closer toward Understanding the Structure and Function of Chromatin.

Authors:  Yawen Bai; Bing-Rui Zhou
Journal:  J Mol Biol       Date:  2020-09-11       Impact factor: 5.469

7.  CENP-C directs a structural transition of CENP-A nucleosomes mainly through sliding of DNA gyres.

Authors:  Samantha J Falk; Jaehyoun Lee; Nikolina Sekulic; Michael A Sennett; Tae-Hee Lee; Ben E Black
Journal:  Nat Struct Mol Biol       Date:  2016-02-15       Impact factor: 15.369

8.  Atomic resolution cryo-EM structure of a native-like CENP-A nucleosome aided by an antibody fragment.

Authors:  Bing-Rui Zhou; K N Sathish Yadav; Mario Borgnia; Jingjun Hong; Baohua Cao; Ada L Olins; Donald E Olins; Yawen Bai; Ping Zhang
Journal:  Nat Commun       Date:  2019-05-24       Impact factor: 14.919

  8 in total

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