Literature DB >> 15299668

A challenging case for protein crystal structure determination: the mating pheromone Er-1 from Euplotes raikovi.

D H Anderson1, M S Weiss, D Eisenberg.   

Abstract

Four different phasing methods have been applied to the determination of the crystal structure of the 40 amino-acid mating pheromone of the unicellular ciliated protozoan Euplotes raikovi. The difficulties, failures and successes in attempts to solve the structure by: (1) molecular replacement, (2) direct phasing using the 'Shake and Bake' algorithm, (3) isomorphous replacement, and (4) multiple-wavelength anomalous dispersion are described. The structure was first solved by molecular replacement, and then was the first successful structure determination by 'Shake and Bake' without the direct involvement of its authors. A description of the current status of the high-resolution refinement of the structure is also given. The model is refined against 1 A resolution data to an R factor of 12.9%, and includes H atoms and discretely disordered side chains.

Entities:  

Year:  1996        PMID: 15299668     DOI: 10.1107/S0907444995014235

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  11 in total

1.  Packed protein bilayers in the 0.90 A resolution structure of a designed alpha helical bundle.

Authors:  G G Privé; D H Anderson; L Wesson; D Cascio; D Eisenberg
Journal:  Protein Sci       Date:  1999-07       Impact factor: 6.725

2.  The Shake-and-Bake structure determination of triclinic lysozyme.

Authors:  A M Deacon; C M Weeks; R Miller; S E Ealick
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-04       Impact factor: 11.205

3.  Novel phasing method using the origin-free modulus sum function expressed in terms of the absolute electron density.

Authors:  Jordi Rius
Journal:  Acta Crystallogr A Found Adv       Date:  2020-06-01       Impact factor: 2.290

4.  Ultratight crystal packing of a 10 kDa protein.

Authors:  Sergio Trillo-Muyo; Andrius Jasilionis; Marcin J Domagalski; Maksymilian Chruszcz; Wladek Minor; Nomeda Kuisiene; Joan L Arolas; Maria Solà; F Xavier Gomis-Rüth
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-02-16

5.  Improved technologies now routinely provide protein NMR structures useful for molecular replacement.

Authors:  Binchen Mao; Rongjin Guan; Gaetano T Montelione
Journal:  Structure       Date:  2011-06-08       Impact factor: 5.006

6.  Centrosymmetric bilayers in the 0.75 A resolution structure of a designed alpha-helical peptide, D,L-Alpha-1.

Authors:  W R Patterson; D H Anderson; W F DeGrado; D Cascio; D Eisenberg
Journal:  Protein Sci       Date:  1999-07       Impact factor: 6.725

7.  Crystal structure of the pheromone Er-13 from the ciliate Euplotes raikovi, with implications for a protein-protein association model in pheromone/receptor interactions.

Authors:  Bill Pedrini; Aaron D Finke; May Marsh; Pierangelo Luporini; Adriana Vallesi; Claudio Alimenti
Journal:  J Struct Biol       Date:  2021-11-17       Impact factor: 3.234

8.  Improving NMR protein structure quality by Rosetta refinement: a molecular replacement study.

Authors:  Theresa A Ramelot; Srivatsan Raman; Alexandre P Kuzin; Rong Xiao; Li-Chung Ma; Thomas B Acton; John F Hunt; Gaetano T Montelione; David Baker; Michael A Kennedy
Journal:  Proteins       Date:  2009-04

9.  A new density-modification procedure extending the application of the recent |ρ|-based phasing algorithm to larger crystal structures.

Authors:  Jordi Rius; Xavier Torrelles
Journal:  Acta Crystallogr A Found Adv       Date:  2021-06-21       Impact factor: 2.290

10.  Localization and orientation of heavy-atom cluster compounds in protein crystals using molecular replacement.

Authors:  Sven O Dahms; Miriam Kuester; Carsten Streb; Christian Roth; Norbert Sträter; Manuel E Than
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-01-19
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