Literature DB >> 15299549

Electron-density histograms and the phase problem.

V Y Lunin1.   

Abstract

The specific properties of the range of possible electron-density values may serve as useful additional information for the determination and refinement of structure-factor phases. Fourier synthesis histograms (showing the spectra of frequencies of different possible values) produce the most adequate representation of these properties. The mathematical background and practical uses of these histograms are discussed. The investigation provides new information on some traditional methods of phase refinement, including density-modification procedures, maximization of Cochran's integral value and other techniques.

Year:  1993        PMID: 15299549     DOI: 10.1107/S0907444992009247

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  10 in total

1.  On the direct determination of three-dimensional crystallographic phases at low resolution: crambin at 6 A.

Authors:  D L Dorset
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

2.  Maximum-likelihood density modification using pattern recognition of structural motifs.

Authors:  T C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-11-21

3.  Map-likelihood phasing.

Authors:  T C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-11-21

4.  Reciprocal-space solvent flattening.

Authors:  T C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-11

5.  Maximum-likelihood density modification.

Authors:  T C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-08

6.  Progress in low-resolution ab initio phasing with CrowdPhase.

Authors:  Julien Jorda; Michael R Sawaya; Todd O Yeates
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-03-01       Impact factor: 7.652

7.  Can I solve my structure by SAD phasing? Planning an experiment, scaling data and evaluating the useful anomalous correlation and anomalous signal.

Authors:  Thomas C Terwilliger; Gábor Bunkóczi; Li Wei Hung; Peter H Zwart; Janet L Smith; David L Akey; Paul D Adams
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-03-01       Impact factor: 7.652

8.  Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard.

Authors:  Thomas C Terwilliger; Paul D Adams; Randy J Read; Airlie J McCoy; Nigel W Moriarty; Ralf W Grosse-Kunstleve; Pavel V Afonine; Peter H Zwart; Li Wei Hung
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-05-15

9.  CrowdPhase: crowdsourcing the phase problem.

Authors:  Julien Jorda; Michael R Sawaya; Todd O Yeates
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-05-23

10.  Metrics for comparison of crystallographic maps.

Authors:  Alexandre Urzhumtsev; Pavel V Afonine; Vladimir Y Lunin; Thomas C Terwilliger; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-09-27
  10 in total

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