Literature DB >> 15299489

Mean phase error and the map-correlation coefficient.

V Y Lunin1, M M Woolfson.   

Abstract

In judging the effectiveness of methods of solving crystal structures, or in phase refinement and development, two criteria are commonly used. The first is the mean phase error, which may be weighted in some way, and the second is the map correlation coefficient which describes the similarity of a map with estimated phases to that with true phases. It is shown that these two measures are directly related and that given the individual phase errors the map correlation coefficient may be found without the need to calculate a map. Various aspects of this connection are examined, including the map correlation coefficient when weights are used for calculating maps and the conditions under which phase extension leads to maps with a higher map correlation coefficient - which involves a balance between the advantage of employing more data and the disadvantage that the extra data may have a higher average phase error.

Year:  1993        PMID: 15299489     DOI: 10.1107/S0907444993005852

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  13 in total

1.  Cluster analysis for phasing with molecular replacement: a feasibility study.

Authors:  Andreas Buehler; Ludmila Urzhumtseva; Vladimir Y Lunin; Alexandre Urzhumtsev
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-06-20

2.  Interpretation of very low resolution X-ray electron-density maps using core objects.

Authors:  Philipp Heuser; Gerrit G Langer; Victor S Lamzin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-06-20

3.  Experimental Phasing of MicroED Data Using Radiation Damage.

Authors:  Michael W Martynowycz; Johan Hattne; Tamir Gonen
Journal:  Structure       Date:  2020-02-04       Impact factor: 5.006

4.  Evidence of functional protein dynamics from X-ray crystallographic ensembles.

Authors:  Jonathan E Kohn; Pavel V Afonine; Jory Z Ruscio; Paul D Adams; Teresa Head-Gordon
Journal:  PLoS Comput Biol       Date:  2010-08-26       Impact factor: 4.475

5.  Improving experimental phases for strong reflections prior to density modification.

Authors:  Monarin Uervirojnangkoorn; Rolf Hilgenfeld; Thomas C Terwilliger; Randy J Read
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-09-20

6.  Direct-methods structure determination of a trypanosome RNA-editing substrate fragment with translational pseudosymmetry.

Authors:  Blaine H M Mooers
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-03-24       Impact factor: 7.652

7.  Progress in low-resolution ab initio phasing with CrowdPhase.

Authors:  Julien Jorda; Michael R Sawaya; Todd O Yeates
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-03-01       Impact factor: 7.652

8.  Averaged kick maps: less noise, more signal... and probably less bias.

Authors:  Jure Pražnikar; Pavel V Afonine; Gregor Guncar; Paul D Adams; Dusan Turk
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-08-06

9.  CrowdPhase: crowdsourcing the phase problem.

Authors:  Julien Jorda; Michael R Sawaya; Todd O Yeates
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-05-23

10.  Metrics for comparison of crystallographic maps.

Authors:  Alexandre Urzhumtsev; Pavel V Afonine; Vladimir Y Lunin; Thomas C Terwilliger; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-09-27
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