Literature DB >> 15299291

NMR - this other method for protein and nucleic acid structure determination.

K Wüthrich1.   

Abstract

For a quarter of a century X-ray diffraction in single crystals was unique in its ability to solve three-dimensional structures of proteins and nucleic acids at atomic resolution. The situation changed in 1984 with the completion of a protein structure determination by nuclear magnetic resonance (NMR) spectroscopy in solution, and today NMR is a second widely used method for biomacromolecular structure determination. This review describes the method of NMR structure determination of biological macromolecules, and attempts to place NMR structure determination in perspective with X-ray crystallography. NMR is most powerful for studies of relatively small systems with molecular weights up to about 30000, but these structures can be obtained in near-physiological milieus. The two techniques have widely different time scales which afford different insights into internal molecular mobility as well as different views of protein or nucleic acid molecular surfaces and hydration. Generally, in addition to information on the average three-dimensional structure, NMR provides information on a wide array of short-lived transient conformational states. Combining information from the two methods can yield a more detailed insight into the structural basis of protein and nucleic acid functions, and thus provide a more reliable platform for rational drug design and the engineering of novel protein functions.

Year:  1995        PMID: 15299291     DOI: 10.1107/S0907444994010188

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  18 in total

1.  Enzyme specificity under dynamic control II: Principal component analysis of alpha-lytic protease using global and local solvent boundary conditions.

Authors:  N Ota; D A Agard
Journal:  Protein Sci       Date:  2001-07       Impact factor: 6.725

2.  Triplex hydration: nanosecond molecular dynamics simulation of the solvated triplex formed by mixed sequences.

Authors:  Rajendra P Ojha; Rakesh K Tiwari
Journal:  Nucleic Acids Res       Date:  2003-11-01       Impact factor: 16.971

3.  Rapid analysis of protein backbone resonance assignments using cryogenic probes, a distributed Linux-based computing architecture, and an integrated set of spectral analysis tools.

Authors:  Daniel Monleón; Kimberly Colson; Hunter N B Moseley; Clemens Anklin; Robert Oswald; Thomas Szyperski; Gaetano T Montelione
Journal:  J Struct Funct Genomics       Date:  2002

4.  The new program OPAL for molecular dynamics simulations and energy refinements of biological macromolecules.

Authors:  P Luginbühl; P Güntert; M Billeter; K Wüthrich
Journal:  J Biomol NMR       Date:  1996-09       Impact factor: 2.835

5.  Optimisation of metric matrix embedding by genetic algorithms.

Authors:  A H van Kampen; L M Buydens; C B Lucasius; M J Blommers
Journal:  J Biomol NMR       Date:  1996-05       Impact factor: 2.835

6.  Automated sequence-specific NMR assignment of homologous proteins using the program GARANT.

Authors:  C Bartels; M Billeter; P Güntert; K Wüthrich
Journal:  J Biomol NMR       Date:  1996-05       Impact factor: 2.835

7.  NMR solution structure of the human prion protein.

Authors:  R Zahn; A Liu; T Lührs; R Riek; C von Schroetter; F López García; M Billeter; L Calzolai; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-04       Impact factor: 11.205

Review 8.  Chemical shift-based methods in NMR structure determination.

Authors:  Santrupti Nerli; Andrew C McShan; Nikolaos G Sgourakis
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2018-03-11       Impact factor: 9.795

9.  NMR Constraints Analyser: a web-server for the graphical analysis of NMR experimental constraints.

Authors:  Davide Martin Heller; Alejandro Giorgetti
Journal:  Nucleic Acids Res       Date:  2010-05-31       Impact factor: 16.971

10.  GeNMR: a web server for rapid NMR-based protein structure determination.

Authors:  Mark Berjanskii; Peter Tang; Jack Liang; Joseph A Cruz; Jianjun Zhou; You Zhou; Edward Bassett; Cam MacDonell; Paul Lu; Guohui Lin; David S Wishart
Journal:  Nucleic Acids Res       Date:  2009-04-30       Impact factor: 16.971

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