Literature DB >> 15281796

Control of metal coordination number in de novo designed peptides through subtle sequence modifications.

Kyung-Hoon Lee1, Manolis Matzapetakis, Soumya Mitra, E Neil G Marsh, Vincent L Pecoraro.   

Abstract

Substitution of an alanine for leucine (shown in light blue) in the hydrophobic interior of designed three-stranded coiled coils allows for the control of metal ion coordination number and geometry. The influence of this perturbation by a noncoordinating residue can be monitored by the dramatic impact on the 113Cd NMR spectrum. The structural effect occurs even when the residue substitution is as much as 7 A from the metal binding site.

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Year:  2004        PMID: 15281796     DOI: 10.1021/ja048839s

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  23 in total

1.  Noncoded Amino Acids in de Novo Metalloprotein Design: Controlling Coordination Number and Catalysis.

Authors:  Karl J Koebke; Vincent L Pecoraro
Journal:  Acc Chem Res       Date:  2019-04-01       Impact factor: 22.384

2.  Lead(II) Binding in Natural and Artificial Proteins.

Authors:  Virginia Cangelosi; Leela Ruckthong; Vincent L Pecoraro
Journal:  Met Ions Life Sci       Date:  2017-04-10

Review 3.  Protein design: toward functional metalloenzymes.

Authors:  Fangting Yu; Virginia M Cangelosi; Melissa L Zastrow; Matteo Tegoni; Jefferson S Plegaria; Alison G Tebo; Catherine S Mocny; Leela Ruckthong; Hira Qayyum; Vincent L Pecoraro
Journal:  Chem Rev       Date:  2014-03-24       Impact factor: 60.622

Review 4.  Catalysis and Electron Transfer in De Novo Designed Helical Scaffolds.

Authors:  Tyler B J Pinter; Karl J Koebke; Vincent L Pecoraro
Journal:  Angew Chem Int Ed Engl       Date:  2020-03-02       Impact factor: 15.336

5.  Methods for Solving Highly Symmetric De Novo Designed Metalloproteins: Crystallographic Examination of a Novel Three-Stranded Coiled-Coil Structure Containing d-Amino Acids.

Authors:  L Ruckthong; J A Stuckey; V L Pecoraro
Journal:  Methods Enzymol       Date:  2016-06-23       Impact factor: 1.600

6.  Making or Breaking Metal-Dependent Catalytic Activity: The Role of Stammers in Designed Three-Stranded Coiled Coils.

Authors:  Tyler B J Pinter; Elizabeth C Manickas; Audrey E Tolbert; Karl J Koebke; Aniruddha Deb; James E Penner-Hahn; Vincent L Pecoraro
Journal:  Angew Chem Int Ed Engl       Date:  2020-09-02       Impact factor: 15.336

7.  Incorporation of second coordination sphere D-amino acids alters Cd(II) geometries in designed thiolate-rich proteins.

Authors:  Leela Ruckthong; Aniruddha Deb; Lars Hemmingsen; James E Penner-Hahn; Vincent L Pecoraro
Journal:  J Biol Inorg Chem       Date:  2017-12-07       Impact factor: 3.358

8.  Harnessing natures ability to control metal ion coordination geometry using de novo designed peptides.

Authors:  Anna F A Peacock; Olga Iranzo; Vincent L Pecoraro
Journal:  Dalton Trans       Date:  2009-01-16       Impact factor: 4.390

9.  Metal templated design of protein interfaces.

Authors:  Eric N Salgado; Xavier I Ambroggio; Jeffrey D Brodin; Richard A Lewis; Brian Kuhlman; F Akif Tezcan
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-23       Impact factor: 11.205

10.  Switching the chirality of the metal environment alters the coordination mode in designed peptides.

Authors:  Anna F A Peacock; Jeanne A Stuckey; Vincent L Pecoraro
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

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