Literature DB >> 15274131

Advances in the development of common interchange standards for proteomic data.

Sandra Orchard1, Chris F Taylor, Henning Hermjakob, Randall K Julian, Rolf Apweiler.   

Abstract

The generation of proteomics data is increasingly high-throughput and high volume. Both experimental design and the technologies used to produce and subsequently analyze the data are becoming ever more complex. An increasing need for methods by which such data can be accurately described, stored and exchanged between experimenters and data repositories has been recognised. Work by the Proteomics Standards Initiative of the Human Proteome Organisation has laid the foundation for the development of standards by which experimental design can be described and data exchange facilitated. At a recent workshop in Nice, participants gathered to review the progress made to date and assist in pushing the process still further forward.

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Year:  2004        PMID: 15274131     DOI: 10.1002/pmic.200400884

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  5 in total

1.  mzResults: an interactive viewer for interrogation and distribution of proteomics results.

Authors:  James T Webber; Manor Askenazi; Jarrod A Marto
Journal:  Mol Cell Proteomics       Date:  2011-01-25       Impact factor: 5.911

2.  Identification and accurate quantitation of biological oligosaccharide mixtures.

Authors:  John S Strum; Jaehan Kim; Shuai Wu; Maria Lorna A De Leoz; Kyle Peacock; Rudolf Grimm; J Bruce German; David A Mills; Carlito B Lebrilla
Journal:  Anal Chem       Date:  2012-08-29       Impact factor: 6.986

3.  An open-source representation for 2-DE-centric proteomics and support infrastructure for data storage and analysis.

Authors:  Romesh Stanislaus; John M Arthur; Balaji Rajagopalan; Rick Moerschell; Brian McGlothlen; Jonas S Almeida
Journal:  BMC Bioinformatics       Date:  2008-01-07       Impact factor: 3.169

Review 4.  Personalized exposure assessment: promising approaches for human environmental health research.

Authors:  Brenda K Weis; David Balshaw; John R Barr; David Brown; Mark Ellisman; Paul Lioy; Gilbert Omenn; John D Potter; Martyn T Smith; Lydia Sohn; William A Suk; Susan Sumner; James Swenberg; David R Walt; Simon Watkins; Claudia Thompson; Samuel H Wilson
Journal:  Environ Health Perspect       Date:  2005-07       Impact factor: 9.031

5.  mzML2ISA & nmrML2ISA: generating enriched ISA-Tab metadata files from metabolomics XML data.

Authors:  Martin Larralde; Thomas N Lawson; Ralf J M Weber; Pablo Moreno; Kenneth Haug; Philippe Rocca-Serra; Mark R Viant; Christoph Steinbeck; Reza M Salek
Journal:  Bioinformatics       Date:  2017-08-15       Impact factor: 6.937

  5 in total

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