Literature DB >> 15268173

Fast semiempirical calculations for nuclear magnetic resonance chemical shifts: a divide-and-conquer approach.

Bing Wang1, Edward N Brothers, Arjan van der Vaart, Kenneth M Merz.   

Abstract

A new approach to calculate nuclear magnetic resonance chemical shifts has been implemented at the semiempirical modified neglect of diatomic overlap level using gauge-including atomic orbitals. The perturbed density matrix with respect to the magnetic field is obtained by the diagonalization of the complex Fock matrix using the divide and conquer (DC) method, instead of by solving the computationally expensive coupled perturbed Hartree-Fock equations. Adopting the Patchkovskii and Thiel parameters [S. Patchkovskii and W. Thiel J. Comput. Chem. 20, 1220 (1999)], we were able to reproduce their results for small organic molecules. The errors introduced by DC method are negligible, as shown by the calculations on a series of polyalaine structures. Test calculations on proteins have demonstrated that our approach makes it possible to calculate chemical shifts routinely on systems with hundreds of atoms with good accuracy. (c) 2004 American Institute of Physics.

Entities:  

Year:  2004        PMID: 15268173     DOI: 10.1063/1.1752877

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  7 in total

1.  Density-fragment interaction approach for quantum-mechanical/molecular-mechanical calculations with application to the excited states of a Mg(2+)-sensitive dye.

Authors:  Kazuhiro Fujimoto; Weitao Yang
Journal:  J Chem Phys       Date:  2008-08-07       Impact factor: 3.488

2.  A critical assessment of the performance of protein-ligand scoring functions based on NMR chemical shift perturbations.

Authors:  Bing Wang; Lance M Westerhoff; Kenneth M Merz
Journal:  J Med Chem       Date:  2007-09-15       Impact factor: 7.446

3.  Multilevel X-Pol: a fragment-based method with mixed quantum mechanical representations of different fragments.

Authors:  Yingjie Wang; Carlos P Sosa; Alessandro Cembran; Donald G Truhlar; Jiali Gao
Journal:  J Phys Chem B       Date:  2012-03-19       Impact factor: 2.991

4.  Quantum mechanical force fields for condensed phase molecular simulations.

Authors:  Timothy J Giese; Darrin M York
Journal:  J Phys Condens Matter       Date:  2017-08-17       Impact factor: 2.333

5.  AFNMR: automated fragmentation quantum mechanical calculation of NMR chemical shifts for biomolecules.

Authors:  Jason Swails; Tong Zhu; Xiao He; David A Case
Journal:  J Biomol NMR       Date:  2015-08-02       Impact factor: 2.835

6.  Parametrization of an Orbital-Based Linear-Scaling Quantum Force Field for Noncovalent Interactions.

Authors:  Timothy J Giese; Haoyuan Chen; Ming Huang; Darrin M York
Journal:  J Chem Theory Comput       Date:  2014-02-11       Impact factor: 6.006

7.  Using quantum mechanical approaches to study biological systems.

Authors:  Kenneth M Merz
Journal:  Acc Chem Res       Date:  2014-06-06       Impact factor: 22.384

  7 in total

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