Literature DB >> 15258135

Osmolytes induce structure in an early intermediate on the folding pathway of barstar.

Lovy Pradeep1, Jayant B Udgaonkar.   

Abstract

Osmolytes stabilize proteins against denaturation, but little is known about how their stabilizing effect might affect a protein folding pathway. Here, we report the effects of the osmolytes, trimethylamine-N-oxide, and sarcosine on the stability of the native state of barstar as well as on the structural heterogeneity of an early intermediate ensemble, IE, on its folding pathway. Both osmolytes increase the stability of the native protein to a similar extent, with stability increasing linearly with osmolyte concentration. Both osmolytes also increase the stability of IE but to different extents. Such stabilization leads to an acceleration in the folding rate. Both osmolytes also alter the structure of IE but do so differentially; the fluorescence and circular dichroism properties of IE differ in the presence of the different osmolytes. Because these properties also differ from those of the unfolded form in refolding conditions, different burst phase changes in the optical signals are seen for folding in the presence of the different osmolytes. An analysis of the urea dependence of the burst phase changes in fluorescence and circular dichroism demonstrates that the formation of IE is itself a multistep process during folding and that the two osmolytes act by stabilizing, differentially, different structural components present in the IE ensemble. Thus, osmolytes can alter the basic nature of a protein folding pathway by discriminating, through differential stabilization, between different members of an early intermediate ensemble, and in doing so, they thereby appear to channel folding along one route when many routes are available. Copyright 2004 American Society for Biochemistry and Molecular Biology, Inc.

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Year:  2004        PMID: 15258135     DOI: 10.1074/jbc.M406323200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  15 in total

1.  Thermodynamic dissection of the intrinsically disordered N-terminal domain of human glucocorticoid receptor.

Authors:  Jing Li; Hesam N Motlagh; Carolyn Chakuroff; E Brad Thompson; Vincent J Hilser
Journal:  J Biol Chem       Date:  2012-06-04       Impact factor: 5.157

2.  Role of protein stabilizers on the conformation of the unfolded state of cytochrome c and its early folding kinetics: investigation at single molecular resolution.

Authors:  Shubhasis Haldar; Samaresh Mitra; Krishnananda Chattopadhyay
Journal:  J Biol Chem       Date:  2010-06-10       Impact factor: 5.157

3.  Influence of polyols on the stability and kinetic parameters of invertase from Candida utilis: correlation with the conformational stability and activity.

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Journal:  Protein J       Date:  2008-12       Impact factor: 2.371

4.  Barrierless evolution of structure during the submillisecond refolding reaction of a small protein.

Authors:  Kalyan K Sinha; Jayant B Udgaonkar
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-03       Impact factor: 11.205

5.  Molecular mechanism for the preferential exclusion of TMAO from protein surfaces.

Authors:  Deepak R Canchi; Pruthvi Jayasimha; Donald C Rau; George I Makhatadze; Angel E Garcia
Journal:  J Phys Chem B       Date:  2012-10-01       Impact factor: 2.991

6.  Single-Molecule Chemo-Mechanical Spectroscopy Provides Structural Identity of Folding Intermediates.

Authors:  Hesam N Motlagh; Dmitri Toptygin; Christian M Kaiser; Vincent J Hilser
Journal:  Biophys J       Date:  2016-03-29       Impact factor: 4.033

7.  Native and nonnative conformational preferences in the urea-unfolded state of barstar.

Authors:  Neel S Bhavesh; Juhi Juneja; Jayant B Udgaonkar; Ramakrishna V Hosur
Journal:  Protein Sci       Date:  2004-11-10       Impact factor: 6.725

8.  Modulation of the activity of newly synthesized human phenylalanine hydroxylase mutant proteins by low-molecular-weight compounds.

Authors:  Cátia Nascimento; João Leandro; Isabel Tavares de Almeida; Paula Leandro
Journal:  Protein J       Date:  2008-09       Impact factor: 2.371

9.  Effects of denaturants and osmolytes on proteins are accurately predicted by the molecular transfer model.

Authors:  Edward P O'Brien; Guy Ziv; Gilad Haran; Bernard R Brooks; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-29       Impact factor: 11.205

10.  Hydrogen bonding progressively strengthens upon transfer of the protein urea-denatured state to water and protecting osmolytes.

Authors:  Luis Marcelo F Holthauzen; Jörg Rösgen; D Wayne Bolen
Journal:  Biochemistry       Date:  2010-02-16       Impact factor: 3.162

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