Literature DB >> 15253354

Biodiversity informatics: managing and applying primary biodiversity data.

Jorge Soberón1, A Townsend Peterson.   

Abstract

Recently, advances in information technology and an increased willingness to share primary biodiversity data are enabling unprecedented access to it. By combining presences of species data with electronic cartography via a number of algorithms, estimating niches of species and their areas of distribution becomes feasible at resolutions one to three orders of magnitude higher than it was possible a few years ago. Some examples of the power of that technique are presented. For the method to work, limitations such as lack of high-quality taxonomic determination, precise georeferencing of the data and availability of high-quality and updated taxonomic treatments of the groups must be overcome. These are discussed, together with comments on the potential of these biodiversity informatics techniques not only for fundamental studies but also as a way for developing countries to apply state of the art bioinformatic methods and large quantities of data, in practical ways, to tackle issues of biodiversity management.

Mesh:

Year:  2004        PMID: 15253354      PMCID: PMC1693343          DOI: 10.1098/rstb.2003.1439

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  18 in total

1.  Museum specimen data predict crop damage by tropical rodents.

Authors:  V Sánchez-Cordero; E Martínez-Meyer
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

2.  Detection of macro-ecological patterns in South American hummingbirds is affected by spatial scale.

Authors:  C Rahbek; G R Graves
Journal:  Proc Biol Sci       Date:  2000-11-22       Impact factor: 5.349

3.  Challenges for taxonomy.

Authors:  H Charles J Godfray
Journal:  Nature       Date:  2002-05-02       Impact factor: 49.962

4.  Future projections for Mexican faunas under global climate change scenarios.

Authors:  A Townsend Peterson; Miguel A Ortega-Huerta; Jeremy Bartley; Victor Sánchez-Cordero; Jorge Soberón; Robert H Buddemeier; David R B Stockwell
Journal:  Nature       Date:  2002-04-11       Impact factor: 49.962

5.  The quiet revolution: biodiversity informatics and the internet.

Authors:  F A Bisby
Journal:  Science       Date:  2000-09-29       Impact factor: 47.728

6.  Biological identifications through DNA barcodes.

Authors:  Paul D N Hebert; Alina Cywinska; Shelley L Ball; Jeremy R deWaard
Journal:  Proc Biol Sci       Date:  2003-02-07       Impact factor: 5.349

Review 7.  Predicting the geography of species' invasions via ecological niche modeling.

Authors:  A Townsend Peterson
Journal:  Q Rev Biol       Date:  2003-12       Impact factor: 4.875

8.  A taxonomic wish-list for community ecology.

Authors:  Nicholas J Gotelli
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-04-29       Impact factor: 6.237

Review 9.  Taxonomy and environmental policy.

Authors:  Cristián Samper
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-04-29       Impact factor: 6.237

10.  Estimating terrestrial biodiversity through extrapolation.

Authors:  R K Colwell; J A Coddington
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1994-07-29       Impact factor: 6.237

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  38 in total

1.  A taxonomic wish-list for community ecology.

Authors:  Nicholas J Gotelli
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-04-29       Impact factor: 6.237

2.  Introduction. Taxonomy for the twenty-first century.

Authors:  H C J Godfray; S Knapp
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-04-29       Impact factor: 6.237

3.  Leveraging biodiversity knowledge for potential phyto-therapeutic applications.

Authors:  Vivekanand Sharma; Indra Neil Sarkar
Journal:  J Am Med Inform Assoc       Date:  2013-03-21       Impact factor: 4.497

4.  The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.

Authors:  Toshiaki Katayama; Mark D Wilkinson; Gos Micklem; Shuichi Kawashima; Atsuko Yamaguchi; Mitsuteru Nakao; Yasunori Yamamoto; Shinobu Okamoto; Kenta Oouchida; Hong-Woo Chun; Jan Aerts; Hammad Afzal; Erick Antezana; Kazuharu Arakawa; Bruno Aranda; Francois Belleau; Jerven Bolleman; Raoul Jp Bonnal; Brad Chapman; Peter Ja Cock; Tore Eriksson; Paul Mk Gordon; Naohisa Goto; Kazuhiro Hayashi; Heiko Horn; Ryosuke Ishiwata; Eli Kaminuma; Arek Kasprzyk; Hideya Kawaji; Nobuhiro Kido; Young Joo Kim; Akira R Kinjo; Fumikazu Konishi; Kyung-Hoon Kwon; Alberto Labarga; Anna-Lena Lamprecht; Yu Lin; Pierre Lindenbaum; Luke McCarthy; Hideyuki Morita; Katsuhiko Murakami; Koji Nagao; Kozo Nishida; Kunihiro Nishimura; Tatsuya Nishizawa; Soichi Ogishima; Keiichiro Ono; Kazuki Oshita; Keun-Joon Park; Pjotr Prins; Taro L Saito; Matthias Samwald; Venkata P Satagopam; Yasumasa Shigemoto; Richard Smith; Andrea Splendiani; Hideaki Sugawara; James Taylor; Rutger A Vos; David Withers; Chisato Yamasaki; Christian M Zmasek; Shoko Kawamoto; Kosaku Okubo; Kiyoshi Asai; Toshihisa Takagi
Journal:  J Biomed Semantics       Date:  2013-02-11

5.  A novel method to handle the effect of uneven sampling effort in biodiversity databases.

Authors:  Iker Pardo; María P Pata; Daniel Gómez; María B García
Journal:  PLoS One       Date:  2013-01-11       Impact factor: 3.240

Review 6.  Ecologic niche modeling and spatial patterns of disease transmission.

Authors:  A Townsend Peterson
Journal:  Emerg Infect Dis       Date:  2006-12       Impact factor: 6.883

7.  The notes from nature tool for unlocking biodiversity records from museum records through citizen science.

Authors:  Andrew Hill; Robert Guralnick; Arfon Smith; Andrew Sallans; Michael Denslow; Joyce Gross; Zack Murrell; Peter Oboyski; Joan Ball; Andrea Thomer; Robert Prys-Jones; Javier de Torre; Patrick Kociolek; Lucy Fortson
Journal:  Zookeys       Date:  2012-07-20       Impact factor: 1.546

8.  Comparative phyloclimatic analysis and evolution of ecological niches in the scimitar babblers (Aves: Timaliidae: Pomatorhinus).

Authors:  Árpád S Nyári; Sushma Reddy
Journal:  PLoS One       Date:  2013-02-06       Impact factor: 3.240

9.  Improved data retrieval from TreeBASE via taxonomic and linguistic data enrichment.

Authors:  Nadia Anwar; Ela Hunt
Journal:  BMC Evol Biol       Date:  2009-05-08       Impact factor: 3.260

10.  Phylogenetic diversity (PD) and biodiversity conservation: some bioinformatics challenges.

Authors:  Daniel P Faith; Andrew M Baker
Journal:  Evol Bioinform Online       Date:  2007-02-17       Impact factor: 1.625

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