Literature DB >> 15250736

A fast photoswitch for minimally perturbed peptides: investigation of the trans-->cis photoisomerization of N-methylthioacetamide.

Jan Helbing1, Harald Bregy, Jens Bredenbeck, Rolf Pfister, Peter Hamm, Robert Huber, Josef Wachtveitl, Luca De Vico, Massimo Olivucci.   

Abstract

Thio amino acids can be integrated into the backbone of peptides without significantly perturbing their structure. In this contribution we use ultrafast infrared and visible spectroscopy as well as state-of-the-art ab initio computations to investigate the photoisomerization of the trans form of N-methylthioacetamide (NMTAA) as a model conformational photoswitch. Following the S2 excitation of trans-NMTAA in water, the return of the molecule into the trans ground state and the formation of the cis isomer is observed on a dual time scale, with a fast component of 8-9 ps and a slow time constant of approximately 250 ps. On both time scales the probability of isomerization to the cis form is found to be 30-40%, independently of excitation wavelength. Ab initio CASPT2//CASSCF photochemical reaction path calculations indicate that, in vacuo, the trans-->cis isomerization event takes place on the S1 and/or T1 triplet potential energy surfaces and is controlled by very small energy barriers, in agreement with the experimentally observed picosecond time scale. Furthermore, the calculations identify one S2/S1 and four nearly isoenergetic S1/S0 conical intersection decay channels. In line with the observed isomerization probability, only one of the S1/S0 conical intersections yields the cis conformation upon S1-->S0 decay. A substantially equivalent excited-state relaxation results from four T1/S0 intersystem crossing points.

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Year:  2004        PMID: 15250736     DOI: 10.1021/ja049227a

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  8 in total

1.  Photoinduced conformational dynamics of a photoswitchable peptide: a nonequilibrium molecular dynamics simulation study.

Authors:  Phuong H Nguyen; Roman D Gorbunov; Gerhard Stock
Journal:  Biophys J       Date:  2006-05-26       Impact factor: 4.033

Review 2.  An evaluation of peptide-bond isosteres.

Authors:  Amit Choudhary; Ronald T Raines
Journal:  Chembiochem       Date:  2011-07-12       Impact factor: 3.164

3.  Perspective: Reaches of chemical physics in biology.

Authors:  Martin Gruebele; D Thirumalai
Journal:  J Chem Phys       Date:  2013-09-28       Impact factor: 3.488

Review 4.  Biosynthesis and Chemical Applications of Thioamides.

Authors:  Nilkamal Mahanta; D Miklos Szantai-Kis; E James Petersson; Douglas A Mitchell
Journal:  ACS Chem Biol       Date:  2019-01-30       Impact factor: 5.100

5.  Native chemical ligation of thioamide-containing peptides: development and application to the synthesis of labeled α-synuclein for misfolding studies.

Authors:  Solongo Batjargal; Yanxin J Wang; Jacob M Goldberg; Rebecca F Wissner; E James Petersson
Journal:  J Am Chem Soc       Date:  2012-04-02       Impact factor: 15.419

6.  Chemoselective Transamidation of Thioamides by Transition-Metal-Free N-C(S) Transacylation.

Authors:  Guangchen Li; Yangyang Xing; Hui Zhao; Jin Zhang; Xin Hong; Michal Szostak
Journal:  Angew Chem Int Ed Engl       Date:  2022-02-23       Impact factor: 15.336

7.  Structural impact of thioamide incorporation into a β-hairpin.

Authors:  Kristen E Fiore; Martijn J Patist; Sam Giannakoulias; Cheng-Hsin Huang; Hitesh Verma; Bhavesh Khatri; Richard P Cheng; Jayanta Chatterjee; E James Petersson
Journal:  RSC Chem Biol       Date:  2022-04-05

8.  An artificial molecular switch that mimics the visual pigment and completes its photocycle in picoseconds.

Authors:  Adalgisa Sinicropi; Elena Martin; Mikhail Ryazantsev; Jan Helbing; Julien Briand; Divya Sharma; Jérémie Léonard; Stefan Haacke; Andrea Cannizzo; Majed Chergui; Vinicio Zanirato; Stefania Fusi; Fabrizio Santoro; Riccardo Basosi; Nicolas Ferré; Massimo Olivucci
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-11       Impact factor: 11.205

  8 in total

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