Literature DB >> 15248092

A new confirmatory Neisseria gonorrhoeae real-time PCR assay targeting the porA pseudogene.

D M Whiley1, P J Buda, J Bayliss, L Cover, J Bates, T P Sloots.   

Abstract

The Roche Cobas Amplicor system is widely used for the detection of Neisseria gonorrhoeae but is known to cross react with some commensal Neisseria spp. Therefore, a confirmatory test is required. The most common target for confirmatory tests is the cppB gene of N. gonorrhoeae. However, the cppB gene is also present in other Neisseria spp. and is absent in some N. gonorrhoeae isolates. As a result, laboratories targeting this gene run the risk of obtaining both false-positive and false-negative results. In the study presented here, a newly developed N. gonorrhoeae LightCycler assay (NGpapLC) targeting the N. gonorrhoeae porA pseudogene was tested. The NGpapLC assay was used to test 282 clinical samples, and the results were compared to those obtained using a testing algorithm combining the Cobas Amplicor System (Roche Diagnostics, Sydney, Australia) and an in-house LightCycler assay targeting the cppB gene (cppB-LC). In addition, the specificity of the NGpapLC assay was investigated by testing a broad panel of bacteria including isolates of several Neisseria spp. The NGpapLC assay proved to have comparable clinical sensitivity to the cppB-LC assay. In addition, testing of the bacterial panel showed the NGpapLC assay to be highly specific for N. gonorrhoeae DNA. The results of this study show the NGpapLC assay is a suitable alternative to the cppB-LC assay for confirmation of N. gonorrhoeae-positive results obtained with Cobas Amplicor. Copyright 2004 Springer-Verlag

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Year:  2004        PMID: 15248092     DOI: 10.1007/s10096-004-1170-0

Source DB:  PubMed          Journal:  Eur J Clin Microbiol Infect Dis        ISSN: 0934-9723            Impact factor:   3.267


  11 in total

1.  Sequence variation in the porA gene of a clone of Neisseria meningitidis during epidemic spread.

Authors:  J Jelfs; R Munro; E Wedege; D A Caugant
Journal:  Clin Diagn Lab Immunol       Date:  2000-05

2.  Polymerase chain reaction for the detection of Neisseria gonorrhoeae in clinical samples.

Authors:  B S Ho; W G Feng; B K Wong; S I Egglestone
Journal:  J Clin Pathol       Date:  1992-05       Impact factor: 3.411

3.  Naturally occurring insertional inactivation of the porA gene of Neisseria meningitidis by integration of IS1301.

Authors:  J Newcombe; K Cartwright; S Dyer; J McFadden
Journal:  Mol Microbiol       Date:  1998-10       Impact factor: 3.501

4.  Identification of regions of the chromosome of Neisseria meningitidis and Neisseria gonorrhoeae which are specific to the pathogenic Neisseria species.

Authors:  A Perrin; X Nassif; C Tinsley
Journal:  Infect Immun       Date:  1999-11       Impact factor: 3.441

5.  A real-time PCR assay for the detection of Neisseria gonorrhoeae by LightCycler.

Authors:  David M Whiley; Genevera M LeCornec; Ian M Mackay; David J Siebert; Theo P Sloots
Journal:  Diagn Microbiol Infect Dis       Date:  2002-02       Impact factor: 2.803

6.  An assessment of the Roche Amplicor Chlamydia trachomatis/Neisseria gonorrhoeae multiplex PCR assay in routine diagnostic use on a variety of specimen types.

Authors:  David E Leslie; Franca Azzato; Norbert Ryan; Janet Fyfe
Journal:  Commun Dis Intell Q Rep       Date:  2003

7.  Evaluation of the specificities of five DNA amplification methods for the detection of Neisseria gonorrhoeae.

Authors:  H M Palmer; H Mallinson; R L Wood; A J Herring
Journal:  J Clin Microbiol       Date:  2003-02       Impact factor: 5.948

8.  Evaluation of AMPLICOR Neisseria gonorrhoeae PCR using cppB nested PCR and 16S rRNA PCR.

Authors:  D J Farrell
Journal:  J Clin Microbiol       Date:  1999-02       Impact factor: 5.948

9.  Evaluation of real time polymerase chain reaction assays for confirmation of Neisseria gonorrhoeae in clinical samples tested positive in the Roche Cobas Amplicor assay.

Authors:  S N Tabrizi; S Chen; M A Cohenford; B B Lentrichia; E Coffman; T Shultz; J W Tapsall; S M Garland
Journal:  Sex Transm Infect       Date:  2004-02       Impact factor: 3.519

10.  Deletion of porA by recombination between clusters of repetitive extragenic palindromic sequences in Neisseria meningitidis.

Authors:  A van der Ende; C T Hopman; J Dankert
Journal:  Infect Immun       Date:  1999-06       Impact factor: 3.441

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  23 in total

1.  Cryptic-plasmid-free gonococci may contribute to failure of cppB gene-based assays to confirm results of BD ProbeTEC PCR for identification of Neisseria gonorrhoeae.

Authors:  J W Tapsall; E A Limnios; N L Nguyen; I Carter; G Lum; K Freeman; S N Tabrizi; S M Garland; D M Whiley; T P Sloots; I W Chambers
Journal:  J Clin Microbiol       Date:  2005-04       Impact factor: 5.948

Review 2.  Nucleic acid amplification testing for Neisseria gonorrhoeae: an ongoing challenge.

Authors:  David M Whiley; John W Tapsall; Theo P Sloots
Journal:  J Mol Diagn       Date:  2006-02       Impact factor: 5.568

3.  Diagnostic value of molecular confirmation assays for Neisseria gonorrhoeae.

Authors:  Silke Peter-Getzlaff; Jacqueline Luethy; Burkhard Springer
Journal:  J Clin Microbiol       Date:  2007-11       Impact factor: 5.948

Review 4.  Laboratory results that should be ignored.

Authors:  Dirk M Elston
Journal:  MedGenMed       Date:  2006-10-11

5.  The laboratory diagnosis of Neisseria gonorrhoeae.

Authors:  Lai-King Ng; Irene E Martin
Journal:  Can J Infect Dis Med Microbiol       Date:  2005-01       Impact factor: 2.471

6.  Evaluation of six commercial nucleic acid amplification tests for detection of Neisseria gonorrhoeae and other Neisseria species.

Authors:  Sepehr N Tabrizi; Magnus Unemo; Athena E Limnios; Tiffany R Hogan; Stig-Ove Hjelmevoll; Susanne M Garland; John Tapsall
Journal:  J Clin Microbiol       Date:  2011-08-03       Impact factor: 5.948

7.  A fast real-time polymerase chain reaction method for sensitive and specific detection of the Neisseria gonorrhoeae porA pseudogene.

Authors:  Stig Ove Hjelmevoll; Merethe Elise Olsen; Johanna U Ericson Sollid; Håkon Haaheim; Magnus Unemo; Vegard Skogen
Journal:  J Mol Diagn       Date:  2006-11       Impact factor: 5.568

8.  Molecular detection and confirmation of Neisseria gonorrhoeae in urogenital and extragenital specimens using the Abbott CT/NG RealTime assay and an in-house assay targeting the porA pseudogene.

Authors:  A Walsh; F O Rourke; B Crowley
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2010-12-19       Impact factor: 3.267

9.  A cluster of culture positive gonococcal infections but with false negative cppB gene based PCR.

Authors:  G Lum; K Freeman; N L Nguyen; E A Limnios; S N Tabrizi; I Carter; I W Chambers; D M Whiley; T P Sloots; S M Garland; J W Tapsall
Journal:  Sex Transm Infect       Date:  2005-10       Impact factor: 3.519

10.  Specific Binding to Differentially Expressed Human Carcinoembryonic Antigen-Related Cell Adhesion Molecules Determines the Outcome of Neisseria gonorrhoeae Infections along the Female Reproductive Tract.

Authors:  Epshita A Islam; Varun C Anipindi; Ian Francis; Yazdan Shaik-Dasthagirisaheb; Stacey Xu; Nelly Leung; Anna Sintsova; Mohsen Amin; Charu Kaushic; Lee M Wetzler; Scott D Gray-Owen
Journal:  Infect Immun       Date:  2018-07-23       Impact factor: 3.441

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