Literature DB >> 15238511

Epistasis and its relationship to canalization in the RNA virus phi 6.

Christina L Burch1, Lin Chao.   

Abstract

Although deleterious mutations are believed to play a critical role in evolution, assessing their realized effect has been difficult. A key parameter governing the effect of deleterious mutations is the nature of epistasis, the interaction between the mutations. RNA viruses should provide one of the best systems for investigating the nature of epistasis because the high mutation rate allows a thorough investigation of mutational effects and interactions. Nonetheless, previous investigations of RNA viruses by S. Crotty and co-workers and by S. F. Elena have been unable to detect a significant effect of epistasis. Here we provide evidence that positive epistasis is characteristic of deleterious mutations in the RNA bacteriophage phi 6. We estimated the effects of deleterious mutations by performing mutation-accumulation experiments on five viral genotypes of decreasing fitness. We inferred positive epistasis because viral genotypes with low fitness were found to be less sensitive to deleterious mutations. We further examined environmental sensitivity in these genotypes and found that low-fitness genotypes were also less sensitive to environmental perturbations. Our results suggest that even random mutations impact the degree of canalization, the buffering of a phenotype against genetic and environmental perturbations. In addition, our results suggest that genetic and environmental canalization have the same developmental basis and finally that an understanding of the nature of epistasis may first require an understanding of the nature of canalization.

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Year:  2004        PMID: 15238511      PMCID: PMC1470902          DOI: 10.1534/genetics.103.021196

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  31 in total

Review 1.  Canalization in evolutionary genetics: a stabilizing theory?

Authors:  G Gibson; G Wagner
Journal:  Bioessays       Date:  2000-04       Impact factor: 4.345

2.  Plasticity, evolvability, and modularity in RNA.

Authors:  L W Ancel; W Fontana
Journal:  J Exp Zool       Date:  2000-10-15

3.  Stability in development and relational balance of X-chromosomes in Drosophila melanogaster.

Authors:  G TEBB; J M THODAY
Journal:  Nature       Date:  1954-12-11       Impact factor: 49.962

4.  Evolution by small steps and rugged landscapes in the RNA virus phi6.

Authors:  C L Burch; L Chao
Journal:  Genetics       Date:  1999-03       Impact factor: 4.562

Review 5.  Why sex and recombination?

Authors:  N H Barton; B Charlesworth
Journal:  Science       Date:  1998-09-25       Impact factor: 47.728

6.  EMS-induced polygenic mutation rates for nine quantitative characters in Drosophila melanogaster.

Authors:  P D Keightley; O Ohnishi
Journal:  Genetics       Date:  1998-02       Impact factor: 4.562

7.  An experimental test for synergistic epistasis and its application in Chlamydomonas.

Authors:  J A de Visser; R F Hoekstra; H van den Ende
Journal:  Genetics       Date:  1997-03       Impact factor: 4.562

8.  Fitness of RNA virus decreased by Muller's ratchet.

Authors:  L Chao
Journal:  Nature       Date:  1990-11-29       Impact factor: 49.962

9.  Estimates of the rate and distribution of fitness effects of spontaneous mutation in Saccharomyces cerevisiae.

Authors:  C Zeyl; J A DeVisser
Journal:  Genetics       Date:  2001-01       Impact factor: 4.562

10.  Estimate of the genomic mutation rate deleterious to overall fitness in E. coli.

Authors:  T T Kibota; M Lynch
Journal:  Nature       Date:  1996-06-20       Impact factor: 49.962

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  56 in total

1.  Magnitude and sign epistasis among deleterious mutations in a positive-sense plant RNA virus.

Authors:  J Lalić; S F Elena
Journal:  Heredity (Edinb)       Date:  2012-04-11       Impact factor: 3.821

2.  Dynamic epistasis for different alleles of the same gene.

Authors:  Lin Xu; Brandon Barker; Zhenglong Gu
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-11       Impact factor: 11.205

Review 3.  Mutational fitness effects in RNA and single-stranded DNA viruses: common patterns revealed by site-directed mutagenesis studies.

Authors:  Rafael Sanjuán
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-06-27       Impact factor: 6.237

4.  The contribution of epistasis to the architecture of fitness in an RNA virus.

Authors:  Rafael Sanjuán; Andrés Moya; Santiago F Elena
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-18       Impact factor: 11.205

5.  Epistasis and the adaptability of an RNA virus.

Authors:  Rafael Sanjuán; José M Cuevas; Andrés Moya; Santiago F Elena
Journal:  Genetics       Date:  2005-05-06       Impact factor: 4.562

Review 6.  Adaptive value of high mutation rates of RNA viruses: separating causes from consequences.

Authors:  Santiago F Elena; Rafael Sanjuán
Journal:  J Virol       Date:  2005-09       Impact factor: 5.103

7.  The rate of compensatory mutation in the DNA bacteriophage phiX174.

Authors:  Art Poon; Lin Chao
Journal:  Genetics       Date:  2005-05-23       Impact factor: 4.562

8.  Effects of random mutations in the human immunodeficiency virus type 1 transcriptional promoter on viral fitness in different host cell environments.

Authors:  Tim van Opijnen; Maarten C Boerlijst; Ben Berkhout
Journal:  J Virol       Date:  2006-07       Impact factor: 5.103

9.  Evolutionary theory for modifiers of epistasis using a general symmetric model.

Authors:  Uri Liberman; Marcus W Feldman
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-13       Impact factor: 11.205

Review 10.  Mechanisms of genetic robustness in RNA viruses.

Authors:  Santiago F Elena; Purificación Carrasco; José-Antonio Daròs; Rafael Sanjuán
Journal:  EMBO Rep       Date:  2006-02       Impact factor: 8.807

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