Literature DB >> 15233989

Diverse fates of paralogs following segmental duplication of telomeric genes.

Andrew Wong1, Eric J Vallender, Konstantina Heretis, Yesim Ilkin, Bruce T Lahn, Christa Lese Martin, David H Ledbetter.   

Abstract

The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q13, the site of an ancestral telomere-telomere fusion. These paralogous regions span approximately 200 kb and contain seven transcriptional units, including the previously identified CBWD, FOXD4, PGM5, F379, CXYorf1, and two human Unigene clusters, Hs.115173 and Hs.189160. Within these gene duplicates, the number of expressed paralogous loci varies, from one in PGM5 to all three in CBWD and Hs.115173. FOXD4 shows the most dramatic changes among its paralogs. Two independent insertion/deletion changes created four different carboxy ends of these intronless genes, two of which are within the 2q13 locus. A comparison of KA/KS values among functional paralogs shows these genes evolved rapidly in primates. This study shows the importance of paralogous regions in the generation of transcriptional diversity and highlights the significance that large-scale telomeric duplication may play in this process.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15233989     DOI: 10.1016/j.ygeno.2004.03.001

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  9 in total

1.  Comparative analysis of pseudogenes across three phyla.

Authors:  Cristina Sisu; Baikang Pei; Jing Leng; Adam Frankish; Yan Zhang; Suganthi Balasubramanian; Rachel Harte; Daifeng Wang; Michael Rutenberg-Schoenberg; Wyatt Clark; Mark Diekhans; Joel Rozowsky; Tim Hubbard; Jennifer Harrow; Mark B Gerstein
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-25       Impact factor: 11.205

2.  Zn-regulated GTPase metalloprotein activator 1 modulates vertebrate zinc homeostasis.

Authors:  Andy Weiss; Caitlin C Murdoch; Katherine A Edmonds; Matthew R Jordan; Andrew J Monteith; Yasiru R Perera; Aslin M Rodríguez Nassif; Amber M Petoletti; William N Beavers; Matthew J Munneke; Sydney L Drury; Evan S Krystofiak; Kishore Thalluri; Hongwei Wu; Angela R S Kruse; Richard D DiMarchi; Richard M Caprioli; Jeffrey M Spraggins; Walter J Chazin; David P Giedroc; Eric P Skaar
Journal:  Cell       Date:  2022-05-17       Impact factor: 66.850

3.  Genome-wide identification, phylogeny, and gonadal expression of fox genes in Nile tilapia, Oreochromis niloticus.

Authors:  Jing Yuan; Wenjing Tao; Yunying Cheng; Baofeng Huang; Deshou Wang
Journal:  Fish Physiol Biochem       Date:  2014-02-14       Impact factor: 2.794

4.  Detailed characterization of, and clinical correlations in, 10 patients with distal deletions of chromosome 9p.

Authors:  Xueya Hauge; Gordana Raca; Sara Cooper; Kristin May; Rhonda Spiro; Margaret Adam; Christa Lese Martin
Journal:  Genet Med       Date:  2008-08       Impact factor: 8.822

5.  Identification of the human zinc transcriptional regulatory element (ZTRE): a palindromic protein-binding DNA sequence responsible for zinc-induced transcriptional repression.

Authors:  Lisa J Coneyworth; Kelly A Jackson; John Tyson; Helen J Bosomworth; Eline van der Hagen; Georgia M Hann; Ogo A Ogo; Daniel C Swann; John C Mathers; Ruth A Valentine; Dianne Ford
Journal:  J Biol Chem       Date:  2012-08-17       Impact factor: 5.157

6.  Centromere remodeling in Hoolock leuconedys (Hylobatidae) by a new transposable element unique to the gibbons.

Authors:  Lucia Carbone; R Alan Harris; Alan R Mootnick; Aleksandar Milosavljevic; David I K Martin; Mariano Rocchi; Oronzo Capozzi; Nicoletta Archidiacono; Miriam K Konkel; Jerilyn A Walker; Mark A Batzer; Pieter J de Jong
Journal:  Genome Biol Evol       Date:  2012-05-16       Impact factor: 3.416

7.  Whole Genome Sequencing Reveals a Chromosome 9p Deletion Causing DOCK8 Deficiency in an Adult Diagnosed with Hyper IgE Syndrome Who Developed Progressive Multifocal Leukoencephalopathy.

Authors:  Aaron G Day-Williams; Chao Sun; Ilijas Jelcic; Helen McLaughlin; Tim Harris; Roland Martin; John P Carulli
Journal:  J Clin Immunol       Date:  2014-11-12       Impact factor: 8.317

8.  PGM5: a novel diagnostic and prognostic biomarker for liver cancer.

Authors:  Yan Jiao; Yanqing Li; Peiqiang Jiang; Wei Han; Yahui Liu
Journal:  PeerJ       Date:  2019-06-11       Impact factor: 2.984

9.  Ancient duplicated conserved noncoding elements in vertebrates: a genomic and functional analysis.

Authors:  Gayle K McEwen; Adam Woolfe; Debbie Goode; Tanya Vavouri; Heather Callaway; Greg Elgar
Journal:  Genome Res       Date:  2006-03-13       Impact factor: 9.043

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.