Literature DB >> 15228339

Sample classification based on Bayesian spectral decomposition of metabonomic NMR data sets.

Radka Stoyanova1, Jeremy K Nicholson, John C Lindon, Truman R Brown.   

Abstract

1H NMR spectra of biofluids provides a wealth of biochemical information on the metabolic status of an organism. Through the application of pattern recognition and classification algorithms, the data have been shown to provide information on disease diagnosis and the beneficial and adverse effects of potential therapeutics. Here, a novel approach is described for identifying subsets of spectral patterns in databases of NMR spectra, and it is shown that the intensities of these spectral patterns can be related to the onset and recovery from a toxic lesion in both a time-related and dose-related fashion. These patterns form a new type of combination biomarker for the biological effect under study. The approach is illustrated with a study of liver toxicity in rats using NMR spectra of urine following administration of a model hepatotoxin hydrazine.

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Year:  2004        PMID: 15228339     DOI: 10.1021/ac049849e

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  6 in total

1.  Diagnosing diabetic nephropathy by 1H NMR metabonomics of serum.

Authors:  Ville-Petteri Mäkinen; Pasi Soininen; Carol Forsblom; Maija Parkkonen; Petri Ingman; Kimmo Kaski; Per-Henrik Groop; Mika Ala-Korpela
Journal:  MAGMA       Date:  2006-12-15       Impact factor: 2.310

2.  Metabonomics in diabetes research.

Authors:  Johan H Faber; Daniel Malmodin; Henrik Toft; Anthony D Maher; Derek Crockford; Elaine Holmes; Jeremy K Nicholson; Marc E Dumas; Dorrit Baunsgaard
Journal:  J Diabetes Sci Technol       Date:  2007-07

3.  Identification and quantification of metabolites in (1)H NMR spectra by Bayesian model selection.

Authors:  Cheng Zheng; Shucha Zhang; Susanne Ragg; Daniel Raftery; Olga Vitek
Journal:  Bioinformatics       Date:  2011-03-12       Impact factor: 6.937

Review 4.  Metabolomics-based methods for early disease diagnostics.

Authors:  G A Nagana Gowda; Shucha Zhang; Haiwei Gu; Vincent Asiago; Narasimhamurthy Shanaiah; Daniel Raftery
Journal:  Expert Rev Mol Diagn       Date:  2008-09       Impact factor: 5.225

5.  MetaboHunter: an automatic approach for identification of metabolites from 1H-NMR spectra of complex mixtures.

Authors:  Dan Tulpan; Serge Léger; Luc Belliveau; Adrian Culf; Miroslava Cuperlović-Culf
Journal:  BMC Bioinformatics       Date:  2011-10-14       Impact factor: 3.169

6.  A novel Bayesian approach to quantify clinical variables and to determine their spectroscopic counterparts in 1H NMR metabonomic data.

Authors:  Aki Vehtari; Ville-Petteri Mäkinen; Pasi Soininen; Petri Ingman; Sanna M Mäkelä; Markku J Savolainen; Minna L Hannuksela; Kimmo Kaski; Mika Ala-Korpela
Journal:  BMC Bioinformatics       Date:  2007-05-03       Impact factor: 3.169

  6 in total

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