Literature DB >> 1522582

G+C-rich tract in 5' end of human introns.

J Engelbrecht1, S Knudsen, S Brunak.   

Abstract

Analysis of an artificial neural network trained to classify DNA as coding or non-coding revealed compositional differences between sequence parts translated into protein and those that were not. The 5' end of human introns was found to have a base composition that was non-random to an extent matching the non-randomness in the 3' end that contains the polypyrimidine tract. The prevailing nucleotides in the initial 50 nucleotides of human introns are guanine and cytosine, the trinucleotide GGG was found to occur almost four times as frequently as it would in sequences with a uniform distribution of the nucleotides. The initial part of terminal exons and their associated terminal introns were shown to have a very special base composition deviating strongly from the normal picture in other exons and introns.

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Year:  1992        PMID: 1522582     DOI: 10.1016/0022-2836(92)90685-d

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  24 in total

1.  Modulation of exon skipping by high-affinity hnRNP A1-binding sites and by intron elements that repress splice site utilization.

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2.  Multiple features contribute to efficient constitutive splicing of an unusually large exon.

Authors:  S R Bruce; M L Peterson
Journal:  Nucleic Acids Res       Date:  2001-06-01       Impact factor: 16.971

3.  Computational analysis of candidate intron regulatory elements for tissue-specific alternative pre-mRNA splicing.

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Journal:  Nucleic Acids Res       Date:  2001-06-01       Impact factor: 16.971

4.  Distribution and characterization of regulatory elements in the human genome.

Authors:  Jacek Majewski; Jurg Ott
Journal:  Genome Res       Date:  2002-12       Impact factor: 9.043

5.  The effect of nonsense codons on splicing: a genomic analysis.

Authors:  Xiang Zhang; James Lee; Lawrence A Chasin
Journal:  RNA       Date:  2003-06       Impact factor: 4.942

Review 6.  Regulation of splicing: the importance of being translatable.

Authors:  Elana Miriami; Ruth Sperling; Joseph Sperling; Uzi Motro
Journal:  RNA       Date:  2004-01       Impact factor: 4.942

7.  Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes.

Authors:  Marie Touchon; Alain Arneodo; Yves d'Aubenton-Carafa; Claude Thermes
Journal:  Nucleic Acids Res       Date:  2004-09-23       Impact factor: 16.971

8.  Dichotomous splicing signals in exon flanks.

Authors:  Xiang H-F Zhang; Christina S Leslie; Lawrence A Chasin
Journal:  Genome Res       Date:  2005-06       Impact factor: 9.043

9.  hnRNP A1 and hnRNP H can collaborate to modulate 5' splice site selection.

Authors:  Jean-François Fisette; Johanne Toutant; Samuel Dugré-Brisson; Luc Desgroseillers; Benoit Chabot
Journal:  RNA       Date:  2009-11-19       Impact factor: 4.942

10.  Sequence information for the splicing of human pre-mRNA identified by support vector machine classification.

Authors:  Xiang H-F Zhang; Katherine A Heller; Ilana Hefter; Christina S Leslie; Lawrence A Chasin
Journal:  Genome Res       Date:  2003-12       Impact factor: 9.043

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