Literature DB >> 15224389

Improving the efficiency and convergence of geometry optimization with the polarizable continuum model: new energy gradients and molecular surface tessellation.

Hui Li1, Jan H Jensen.   

Abstract

New equations are derived and implemented for efficient and accurate computation of solvation energy derivatives for the conductor-like polarizable continuum model (C-PCM) and the isotropic integral equation formalism polarizable continuum model (IEF-PCM). Two new molecular surface tessellation procedures GEPOL-RT and GEPOL-AS that generate near continuous potential energy surfaces are proposed for PCM geometry optimization. The combined use of these new techniques leads to efficient and convergent geometry optimizations with the PCMs. Copyright 2004 Wiley Periodicals, Inc. J Comput Chem 25: 1449-1462, 2004

Year:  2004        PMID: 15224389     DOI: 10.1002/jcc.20072

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  13 in total

1.  Understanding arsenate reaction kinetics with ferric hydroxides.

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2.  Decoding nitric oxide release rates of amine-based diazeniumdiolates.

Authors:  Yan-Ni Wang; Jack Collins; Ryan J Holland; Larry K Keefer; Joseph Ivanic
Journal:  J Phys Chem A       Date:  2013-07-23       Impact factor: 2.781

3.  An implicit solvent model for SCC-DFTB with Charge-Dependent Radii.

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Journal:  J Chem Theory Comput       Date:  2010-08-10       Impact factor: 6.006

4.  Sphingosine 1-phosphate pKa and binding constants: intramolecular and intermolecular influences.

Authors:  Mor M Naor; Michelle D Walker; James R Van Brocklyn; Gabor Tigyi; Abby L Parrill
Journal:  J Mol Graph Model       Date:  2007-03-14       Impact factor: 2.518

5.  Importance of dispersion and electron correlation in ab initio protein folding.

Authors:  Xiao He; Laszlo Fusti-Molnar; Guanglei Cui; Kenneth M Merz
Journal:  J Phys Chem B       Date:  2009-04-16       Impact factor: 2.991

6.  Visible-light organic photocatalysis for latent radical-initiated polymerization via 2e⁻/1H⁺ transfers: initiation with parallels to photosynthesis.

Authors:  Alan Aguirre-Soto; Chern-Hooi Lim; Albert T Hwang; Charles B Musgrave; Jeffrey W Stansbury
Journal:  J Am Chem Soc       Date:  2014-05-08       Impact factor: 15.419

7.  Computation of host-guest binding free energies with a new quantum mechanics based mining minima algorithm.

Authors:  Peng Xu; Tosaporn Sattasathuchana; Emilie Guidez; Simon P Webb; Kilinoelani Montgomery; Hussna Yasini; Iara F M Pedreira; Mark S Gordon
Journal:  J Chem Phys       Date:  2021-03-14       Impact factor: 3.488

8.  The mechanisms of a bifunctional fluorescent probe for detecting fluoride and sulfite based on excited-state intramolecular proton transfer and intramolecular charge transfer.

Authors:  Xueli Jia; Yonggang Yang; Hongsheng Zhai; Qingqing Zhang; Yuanyuan He; Yang Liu; Yufang Liu
Journal:  Struct Dyn       Date:  2021-05-27       Impact factor: 2.920

9.  Interface of the polarizable continuum model of solvation with semi-empirical methods in the GAMESS program.

Authors:  Casper Steinmann; Kristoffer L Blædel; Anders S Christensen; Jan H Jensen
Journal:  PLoS One       Date:  2013-07-02       Impact factor: 3.240

10.  Short strong hydrogen bonds in proteins: a case study of rhamnogalacturonan acetylesterase.

Authors:  Annette Langkilde; Søren M Kristensen; Leila Lo Leggio; Anne Mølgaard; Jan H Jensen; Andrew R Houk; Jens Christian Navarro Poulsen; Sakari Kauppinen; Sine Larsen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-07-17
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