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Literature DB >> 15215344

DIALIGN: multiple DNA and protein sequence alignment at BiBiServ.

Abstract

DIALIGN is a widely used software tool for multiple DNA and protein sequence alignment. The program combines local and global alignment features and can therefore be applied to sequence data that cannot be correctly aligned by more traditional approaches. DIALIGN is available online through Bielefeld Bioinformatics Server (BiBiServ). The downloadable version of the program offers several new program features. To compare the output of different alignment programs, we developed the program AltAVisT. Our software is available at http://bibiserv.TechFak.Uni-Bielefeld.DE/dialign/.

Mesh：

Year: 2004 PMID： 15215344 PMCID： PMC441511 DOI： 10.1093/nar/gkh373

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

19 in total

1. A comprehensive comparison of multiple sequence alignment programs.

Authors: J D Thompson; F Plewniak; O Poch
Journal: Nucleic Acids Res Date: 1999-07-01 Impact factor: 16.971

2. Multiple sequence alignment using partial order graphs.

Authors: Christopher Lee; Catherine Grasso; Mark F Sharlow
Journal: Bioinformatics Date: 2002-03 Impact factor: 6.937

3. Rate matrices for analyzing large families of protein sequences.

Authors: C Devauchelle; A Grossmann; A Hénaut; M Holschneider; M Monnerot; J L Risler; B Torrésani
Journal: J Comput Biol Date: 2001 Impact factor: 1.479

Review 4. Recent progress in multiple sequence alignment: a survey.

Authors: Cédric Notredame
Journal: Pharmacogenomics Date: 2002-01 Impact factor: 2.533

5. T-Coffee: A novel method for fast and accurate multiple sequence alignment.

Authors: C Notredame; D G Higgins; J Heringa
Journal: J Mol Biol Date: 2000-09-08 Impact factor: 5.469

6. AltAVisT: comparing alternative multiple sequence alignments.

Authors: Burkhard Morgenstern; Sachin Goel; Alexander Sczyrba; Andreas Dress
Journal: Bioinformatics Date: 2003-02-12 Impact factor: 6.937

7. Exon discovery by genomic sequence alignment.

Authors: Burkhard Morgenstern; Oliver Rinner; Saïd Abdeddaïm; Dirk Haase; Klaus F X Mayer; Andreas W M Dress; Hans-Werner Mewes
Journal: Bioinformatics Date: 2002-06 Impact factor: 6.937

8. Quality assessment of multiple alignment programs.

Authors: Timo Lassmann; Erik L L Sonnhammer
Journal: FEBS Lett Date: 2002-10-02 Impact factor: 4.124

Review 9. An applications-focused review of comparative genomics tools: capabilities, limitations and future challenges.

Authors: Patrick Chain; Stefan Kurtz; Enno Ohlebusch; Tom Slezak
Journal: Brief Bioinform Date: 2003-06 Impact factor: 11.622

10. Divide-and-conquer multiple alignment with segment-based constraints.

Authors: Michael Sammeth; Burkhard Morgenstern; Jens Stoye
Journal: Bioinformatics Date: 2003-10 Impact factor: 6.937

75 in total

1. Evening expression of arabidopsis GIGANTEA is controlled by combinatorial interactions among evolutionarily conserved regulatory motifs.

Authors: Markus C Berns; Karl Nordström; Frédéric Cremer; Réka Tóth; Martin Hartke; Samson Simon; Jonas R Klasen; Ingmar Bürstel; George Coupland
Journal: Plant Cell Date: 2014-10-31 Impact factor: 11.277

2. Prediction of regulatory interactions from genome sequences using a biophysical model for the Arabidopsis LEAFY transcription factor.

Authors: Edwige Moyroud; Eugenio Gómez Minguet; Felix Ott; Levi Yant; David Posé; Marie Monniaux; Sandrine Blanchet; Olivier Bastien; Emmanuel Thévenon; Detlef Weigel; Markus Schmid; François Parcy
Journal: Plant Cell Date: 2011-04-22 Impact factor: 11.277

3. Phylogenetic studies favour the unification of Pennisetum, Cenchrus and Odontelytrum (Poaceae): a combined nuclear, plastid and morphological analysis, and nomenclatural combinations in Cenchrus.

Authors: M Amelia Chemisquy; Liliana M Giussani; María A Scataglini; Elizabeth A Kellogg; Osvaldo Morrone
Journal: Ann Bot Date: 2010-07 Impact factor: 4.357

4. Selective acquisition and retention of genomic sequences by Pack-Mutator-like elements based on guanine-cytosine content and the breadth of expression.

Authors: Ann A Ferguson; Dongyan Zhao; Ning Jiang
Journal: Plant Physiol Date: 2013-09-12 Impact factor: 8.340