Literature DB >> 12584133

AltAVisT: comparing alternative multiple sequence alignments.

Burkhard Morgenstern1, Sachin Goel, Alexander Sczyrba, Andreas Dress.   

Abstract

UNLABELLED: We introduce a WWW-based tool that is able to compare two alternative multiple alignments of a given sequence set. Regions where both alignments coincide are color-coded to visualize the local agreement between the two alignments and to identify those regions that can be considered to be reliably aligned. AVAILABILITY: http://bibiserv.techfak.uni-bielefeld.de/altavist/.

Mesh：

Year:  2003        PMID： 12584133     DOI： 10.1093/bioinformatics/btf882

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  9 in total

1.  DIALIGN: multiple DNA and protein sequence alignment at BiBiServ.

Authors:  Burkhard Morgenstern
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

2.  Identifying functionally informative evolutionary sequence profiles.

Authors:  Nelson Gil; Andras Fiser
Journal:  Bioinformatics       Date:  2018-04-15       Impact factor: 6.937

3.  Stability of multiple alignments and phylogenetic trees: an analysis of ABC-transporter proteins family.

Authors:  Holger Wagner; Burkhard Morgenstern; Andreas Dress
Journal:  Algorithms Mol Biol       Date:  2008-11-06       Impact factor: 1.405

4.  Phylogenetic approaches to natural product structure prediction.

Authors:  Nadine Ziemert; Paul R Jensen
Journal:  Methods Enzymol       Date:  2012       Impact factor: 1.600

5.  Embryogenic potential and expression of embryogenesis-related genes in conifers are affected by treatment with a histone deacetylase inhibitor.

Authors:  Daniel Uddenberg; Silvia Valladares; Malin Abrahamsson; Jens Fredrik Sundström; Annika Sundås-Larsson; Sara von Arnold
Journal:  Planta       Date:  2011-05-04       Impact factor: 4.116

6.  Odorant binding proteins of the red imported fire ant, Solenopsis invicta: an example of the problems facing the analysis of widely divergent proteins.

Authors:  Dietrich Gotzek; Hugh M Robertson; Yannick Wurm; DeWayne Shoemaker
Journal:  PLoS One       Date:  2011-01-31       Impact factor: 3.240

7.  Automatic assessment of alignment quality.

Authors:  Timo Lassmann; Erik L L Sonnhammer
Journal:  Nucleic Acids Res       Date:  2005-12-16       Impact factor: 16.971

Review 8.  IVisTMSA: Interactive Visual Tools for Multiple Sequence Alignments.

Authors:  Muhammad Tariq Pervez; Masroor Ellahi Babar; Asif Nadeem; Naeem Aslam; Nasir Naveed; Sarfraz Ahmad; Shah Muhammad; Salman Qadri; Muhammad Shahid; Tanveer Hussain; Maryam Javed
Journal:  Evol Bioinform Online       Date:  2015-03-12       Impact factor: 1.625

9.  Hepatitis C virus phylogenetic clustering is associated with the social-injecting network in a cohort of people who inject drugs.

Authors:  Rachel Sacks-Davis; Galina Daraganova; Campbell Aitken; Peter Higgs; Lilly Tracy; Scott Bowden; Rebecca Jenkinson; David Rolls; Philippa Pattison; Garry Robins; Jason Grebely; Alyssa Barry; Margaret Hellard
Journal:  PLoS One       Date:  2012-10-26       Impact factor: 3.240
  9 in total

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