Literature DB >> 15215231

Use of 15N-NMR to resolve molecular details in isotopically-enriched carbohydrates: sequence-specific observations in hyaluronan oligomers up to decasaccharides.

Charles D Blundell1, Paul L DeAngelis, Anthony J Day, Andrew Almond.   

Abstract

The glycosaminoglycan hyaluronan is a vital structural component of extracellular matrices with diverse biological functions, a molecular understanding of which requires a detailed description of secondary and tertiary solution structures. Various models of these structures have been proposed on the basis of 1H and 13C natural-abundance nuclear magnetic resonance (NMR) experiments, but resonance overlap limits further progress with these techniques. We have therefore produced 15N- and 13C- isotopically-labeled hyaluronan oligosaccharides and applied triple-resonance and 3D experiments to overcome this restriction. Spectra recorded on oligosaccharides (of lengths 4, 6, 8, 10, and 12 sugar rings), reveal that the 15N nucleus allows resolution of the amide groups in a decamer at high magnetic field, whereas 13C natural-abundance NMR can only resolve internal groups up to hexamers. Complete 13N sequence- specific assignments of these oligosaccharides indicate that the chemical shift dispersion can be explained by end-effects, which are seen even in the middle of octamers. Triple- resonance and 15N-edited 3D experiments, among the first of their kind in oligosaccharides, have been used to achieve resolution of ring 1H and 13C nuclei where not possible previously. The subtle chemical shift perturbations resolved suggest that different conformations and dynamics occur at the ends, which may contribute to the range of biological activities displayed by varying lengths of hyaluronan. 15N-NMR in carbohydrates has not received much attention before, however, this study demonstrates it has clear advantages for achieving resolution and assessing dynamic motion. These conclusions are likely to be applicable to the study of the structure and dynamics of other nitrogen-containing carbohydrates.

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Year:  2004        PMID: 15215231     DOI: 10.1093/glycob/cwh117

Source DB:  PubMed          Journal:  Glycobiology        ISSN: 0959-6658            Impact factor:   4.313


  19 in total

Review 1.  Recent advances in segmental isotope labeling of proteins: NMR applications to large proteins and glycoproteins.

Authors:  Lenka Skrisovska; Mario Schubert; Frédéric H-T Allain
Journal:  J Biomol NMR       Date:  2009-08-19       Impact factor: 2.835

2.  Tracking hydrogen/deuterium exchange at glycan sites in glycoproteins by mass spectrometry.

Authors:  M Guttman; M Scian; K K Lee
Journal:  Anal Chem       Date:  2011-09-06       Impact factor: 6.986

3.  Hyaluronan: the absence of amide-carboxylate hydrogen bonds and the chain conformation in aqueous solution are incompatible with stable secondary and tertiary structure models.

Authors:  Charles D Blundell; Paul L Deangelis; Andrew Almond
Journal:  Biochem J       Date:  2006-06-15       Impact factor: 3.857

4.  Characterization of glycosaminoglycans by 15N NMR spectroscopy and in vivo isotopic labeling.

Authors:  Vitor H Pomin; Joshua S Sharp; Xuanyang Li; Lianchun Wang; James H Prestegard
Journal:  Anal Chem       Date:  2010-05-15       Impact factor: 6.986

5.  Engineering a polymeric gene delivery vector based on poly(ethylenimine) and hyaluronic acid.

Authors:  Clark J Needham; Austin K Williams; Sue Anne Chew; F Kurtis Kasper; Antonios G Mikos
Journal:  Biomacromolecules       Date:  2012-04-11       Impact factor: 6.988

6.  Fourier transform mass spectrometry to monitor hyaluronan-protein interactions: use of hydrogen/deuterium amide exchange.

Authors:  Nicholas T Seyfried; James A Atwood; Austin Yongye; Andrew Almond; Anthony J Day; Ron Orlando; Robert J Woods
Journal:  Rapid Commun Mass Spectrom       Date:  2007       Impact factor: 2.419

7.  Characterizing the microstructure of heparin and heparan sulfate using N-sulfoglucosamine 1H and 15N NMR chemical shift analysis.

Authors:  Derek J Langeslay; Consuelo N Beecher; Annamaria Naggi; Marco Guerrini; Giangiacomo Torri; Cynthia K Larive
Journal:  Anal Chem       Date:  2012-12-31       Impact factor: 6.986

Review 8.  Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: An update for 2003-2004.

Authors:  David J Harvey
Journal:  Mass Spectrom Rev       Date:  2009 Mar-Apr       Impact factor: 10.946

9.  13C-sialic acid labeling of glycans on glycoproteins using ST6Gal-I.

Authors:  Megan A Macnaughtan; Fang Tian; Shan Liu; Lu Meng; Seongha Park; Parastoo Azadi; Kelley W Moremen; James H Prestegard
Journal:  J Am Chem Soc       Date:  2008-08-14       Impact factor: 15.419

10.  Influence of Sulfolane on ESI-MS Measurements of Protein-Ligand Affinities.

Authors:  Yuyu Yao; Michele R Richards; Elena N Kitova; John S Klassen
Journal:  J Am Soc Mass Spectrom       Date:  2015-12-14       Impact factor: 3.109

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