| Literature DB >> 15200682 |
Efthimia E Lioliou1, Dimitrios A Kyriakidis.
Abstract
This review considers the role of bacterial antizyme in the regulation of polyamine biosynthesis and gives new perspectives on the involvement of antizyme in other significant cellular mechanisms. Antizyme is a protein molecule induced by the end product of the enzymic reaction that it inhibits, in a non-competitive manner. The bacterial ornithine decarboxylase is regulated by nucleotides, phosphorylation and antizyme. The inhibition of ornithine decarboxylase by antizyme can be relieved to different degrees by DNA or by a variety of synthetic nucleic acid polymers, attributed to a specific interaction between nucleic acid and antizyme. Recently, this interplay between bacterial antizyme and nucleic acid was determined by discerning an additional function to antizyme that proved to be the atoC gene product, encoding the response regulator of the bacterial two-component system AtoS-AtoC. The gene located just upstream of atoC encodes the sensor kinase, named AtoS, that modulates AtoC activity. AtoC regulates expression of atoDAEB operon which is involved in short-chain fatty acid metabolism. Antizyme is thus referred to as AtoC, functioning both as a post-translational and transcriptional regulator. Also, the AtoS-AtoC signal transduction system in E. coli has a positive regulatory role on poly-(R)-3-hydroxybutyrate biosynthesis. The properties and gene structural similarities of antizymes from different organisms were compared. It was revealed that conserved domains are present mostly in the C-domain of all antizymes. BLAST analysis of the E. coli antizyme protein (AtoC) showed similarities around 69-58% among proteobacteria, g-proteobacteria, enterobacteria and the thermophilic bacterium Thermus thermophilus. A working hypothesis is proposed for the metabolic role of antizyme (AtoC) describing the significant biological implications of this protein molecule. Whether antizymes exist to other enzymes in different tissues, meeting the criteria discussed in the text remains to be elucidated.Entities:
Year: 2004 PMID: 15200682 PMCID: PMC441398 DOI: 10.1186/1475-2859-3-8
Source DB: PubMed Journal: Microb Cell Fact ISSN: 1475-2859 Impact factor: 5.328
Best hits of BLAST analysis of the E. coli K-12 atoC gene against the genomes of all microorganisms
| Q06065 ATOC ECOLI | Acetoacetate metabolism regulatory protein atoC (Ornithine/arginine decarboxylase inhibitor) (Ornithine decarboxylase antizyme) | 2 | 95/95 | 16, 47, 48, 70 | |
| NP 754649.1 | Acetoacetate metabolism Regulatory protein atoC | 3 | 95/95 | 71 | |
| ZP 00015409.1 | COG2204: Response regulator containing CheY-like receiver, AAA-type ATPase and DNA-binding domains | 1 | 52/69 | 72 | |
| NP 953090.1 | Sigma-54 dependent DNA binding response regulator | 14 | 45/61 | 73 | |
| NP 972572.1 | sigma-54 dependent transcriptional regulator/response regulator | 1 | 44/64 | 74 | |
| ZP 00079669.1 | COG2204: Response regulator containing CheY-like receiver, AAA-type ATPase and DNA-binding domains | 13 | 42/63 | 72 | |
| YP 012430.1 | sigma-54 dependent transcriptional regulator/response regulator | 5 | 43/61 | 75 | |
| NP 218960.1 | response regulatory protein (atoC) | 1 | 43/63 | 76 | |
| AAQ63912.1 | mutant NtrC-like activator | 8 | 44/62 | 77 | |
| YP 008363.1 | probable two-component response regulator | 1 | 44/62 | 78 | |
| ZP 00128642.1 | COG2204: Response regulator containing CheY-like receiver, AAA-type ATPase and DNA-binding domains | 4 | 42/61 | 72 | |
| NP 968400.1 | regulator protein pilR | 3 | 40/63 | 79 | |
| AAL27375.1 | HydG | 1 | 43/62 | 80 | |
| NP 709798.1 | response regulator of hydrogenase 3 activity (sensor HydH) | 2 | 44/61 | 81 | |
| NP 992358.1 | Response regulator containing CheY-like receiver, AAA-type ATPase and DNA-binding domains | 1 | 43/63 | 82 | |
| NP 290636.1 | response regulator of hydrogenase 3 activity (sensor HydH) | 2 | 44/60 | 83 | |
| NP 243814.1 | two-component response regulator in acetoacetate metabolism | 1 | 41/62 | 84 | |
| Q9APD9 ZRAR KLEOX | Transcriptional regulatory protein zraR | 1 | 43/61 | 85 | |
| NP 312817.1 | GlnG; response regulator for gln | 1 | 40/58 | 86 | |
| P25852 ZRAR SALTY | Transcriptional regulatory protein zraR | 2 | 43/60 | 87 | |
| NP 458044.1 | Two-component system, response regulator | 2 | 40/58 | 88 | |
| YP 005107.1* | two-component response regulator | 22 | 33/58 | 69 |
aHits: Number of homologues found in each microorganism (only the one with the highest homology is presented). bId./Sim.: Identities/Similarities. * The E. coli K-12 atoC gene was aligned against the T. thermophilus genome independently since its homology was not detected among the first 100 best BLAST hits (threshold 0.005).
Figure 1The involvement of antizyme (AtoC) in various regulatory mechanisms in E. coli.